| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_29940 |
|---|
| Symbol | |
|---|
| ID | 8634628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 3323558 |
|---|
| End bp | 3324262 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | two component transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003315729 |
|---|
| Protein GI | 269796274 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.683883 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCA CACCGCAGAG CCCGCGTCCC GACCAGGAGC CCAGCACGCG AGCAGGCGCC
CCGAGCGAGC CCGAGCGCCC CACCGTCAGG GTCGTGGTCG CGGACGACCA CCCCGTCGTC
CGCGCGGGCA TCGTCGGGAT GCTCGGCGTC GAGAGCGACA TCGAGGTGGT GGGCGAGGCC
GAGGACGGCC GCCAGGCGGT CGACCTCGCC CGCACCCTGT CGCCCGACGT CGTCATCACC
GACCTGCGGA TGCCCGTCCT CGACGGGGTC GGGGCCACCC GGGAGATCGT GGCGCTCCCG
GGGACGGTGC GCGTGGTGGT GCTGACGACC TACGAGACGG ACGGCGAGAT CCTGCGGGCC
GTCGAGGCGG GGGCCACCGG CTACCTGCTC AAGGACACCC CGCGGGCCGA GCTCGTCGCC
GGGATCCGCG AGGCCGCCCG GGGGCAGACG GTGCTCACAC CGTCGGTCGC GACCCGGCTG
GTGAGCCAGG TCGGCTCCCG TGCCGACAGG CTCACCCCGC GCGAGGTCGA GGTGCTGCGC
GCGGTCGCGC GCGGGCTGAG CAACGCGGCC GTCGGGCACG AGCTGTTCAT CTCCGAGACG
ACCGTGAAGA CGCACCTCAT CCGGGCCTTC GGCAAGCTGG GCGTCAACGA CCGGACGCAC
GCCGTCACCG TGGCGACGGA CCGCGGCCTG CTCGGGCAGG TGTGA
|
|---|
| Protein sequence | MTSTPQSPRP DQEPSTRAGA PSEPERPTVR VVVADDHPVV RAGIVGMLGV ESDIEVVGEA
EDGRQAVDLA RTLSPDVVIT DLRMPVLDGV GATREIVALP GTVRVVVLTT YETDGEILRA
VEAGATGYLL KDTPRAELVA GIREAARGQT VLTPSVATRL VSQVGSRADR LTPREVEVLR
AVARGLSNAA VGHELFISET TVKTHLIRAF GKLGVNDRTH AVTVATDRGL LGQV
|
|---|
| |