Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sked_29830 |
Symbol | |
ID | 8634617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sanguibacter keddieii DSM 10542 |
Kingdom | Bacteria |
Replicon accession | NC_013521 |
Strand | - |
Start bp | 3312060 |
End bp | 3315572 |
Gene Length | 3513 bp |
Protein Length | 1170 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_003315719 |
Protein GI | 269796264 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.896013 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCTGCCT CGCGCACCCC TTCTGCTCCG TCCGCCGACG CAATCGCGAA CCGCACCGCA TCTCGGCGCG TCTCCTTCGC CAAGATTTTT GAGCCGCTCG AGGTCCCCGA CCTCCTCGGC CTCCAGACCG ACAGCTTCGA CTGGCTCCTG GGCAACGAGA AGTGGCGCGC GCGTGTCGCG GCAGCCATGA AGCTCGGCAC CCAGGACGTG CCGGAGACCT CCGGGCTGGA AGAGATCTTC GAAGAGATCT CCCCGATCGA GGACTTCGGC TCCTCGATGT CACTCTCGTT CTCCAACCAC CGCTTCGAGC CCCCGAAGCA CACGGCGGAG GAGTGCAAGG AGAAGGACTT CACCTACGCG GCGCCTCTGT TCGTCACCGC GGAGTTCTTC AACTACAACA CCGGCGAGAT CAAGAGCCAG ACGGTCTTCA TGGGTGACTT CCCCCTGATG ACCGAGCGCG GCACCTTCAT CATCAACGGC ACCGAGCGCG TCGTCGTCTC GCAGCTCGTC CGTTCGCCCG GCGTGTACTT CGAGCGCGCG GCCGACAAGA CCAGCGACAA GGACATCTTC TCCGCGAAGA TCATCCCGCA GCGTGGTGCC TGGCTCGAGT TCGAGATCGA CAAGCGCGAC GCCGTCGGCG TCCGCGTCGA CCGCAAGCGC AAGCAGTCGG TCACCGTCCT CCTCAAGGCC CTCGGCCTCA CGGAGTCGGA GATCCGCGAG GAGTTCGCGG CCTTCCCCGC GATCCTCGAC ACCCTCGAGA AGGACAACGT CACGACCGAG GAAGAGGCGC TCGTCGACCT CTACCGCAAG ATCCGTCCGG GCGAGCCGCC CACGGTCGAG GCCGGTCGCT CGCTCCTCGA GAACTTCTAC TTCAACTCCA AGCGCTACGA CCTCGCGAAG GTCGGCCGCT ACAAGGTGAA CAAGAAGCTC GGCATCGACG CGCCGCTCGC CGACTCGGTC CTGACCGTCA CCGACATCGT CAAGACGATC AAGTACCTCG CGGCCCTGCA CGCCGACGTC ACCGCGCTCG ACGGCGTCAA GAACGGCGAG GCCGTCGAGG TGCGCGTCGA GACCGACGAC ATCGACCACT TCGGCAACCG TCGTATCCGC GCCGTGGGCG AGCTCATCCA GAACCAGGTC CGCACCGGCC TGTCGCGGAT GGAGCGCGTC GTGCGCGAGC GCATGACGAC CCAGGACGTC GAGGCCATCG CCCCGCAGAC CCTGATCAAC ATCCGCCCCG TCGTGGCGTC GATCAAGGAG TTCTTCGGGA CGTCCCAGCT GTCGCAGTTC ATGGACCAGA ACAACCCGCT CGCCGGCCTG ACGCACAAGC GTCGTCTGTC CGCGCTGGGC CCGGGTGGTC TGTCCCGCGA CCGCGCCGGC ATGGAGGTCC GTGACGTCCA CCCGTCGCAC TACGGCCGCA TGTGCCCGAT CGAGACCCCT GAGGGCCCGA ACATCGGCCT CATCGGCTCG CTCGCGTCCT TCGGTCGCAT CAACCCCTTC GGCTTCATCG AGACGCCGTA CCGCAAGGTC GAGAACGGCA AGGTCTCCGA CGACGTCGTG TACCTCACGG CCGACGACGA GGACCGCTAC GTCATCGCCC AGGCGAACAC GGAGCTCAAC GAGGACGGCT CGTTCCGCCA GGAGCGCGTC CTGGTCCGCA CCAAGGGTGG CGAGACGGAC GACGTCCTCG GCTCCAACGT GGACTACATG GACGTCTCCC CGCGCCAGAT GGTGTCGGTC GCGACCGCCC TCATCCCGTT CCTCGAGCAC GACGACGCCA ACCGCGCGCT CATGGGCGCC AACATGCAGC GCCAGGCCGT GCCGCTGGTC CGCTCGGAGG CTCCCTTCGT CGGGACCGGC ATGGAGCGTC GTGCCGCGAT CGACGCCGGT GACGTCATCG TCGCCACCAA GCCCGGTGTG GTCACCGAGG TCTCCGCAGA CCTCATCGTC GTCGCCAACG ACGACGCGAC CACCACGAGC TACCGCGCCG CGAAGTTCCG CCGCTCGAAC CAGGGGACCT CCTACAACCA GCGCGTGCTG GTCGACGAGG GTGCCCGCGT CGAGGTCGGC TCGGTCCTCG CCGACGGCCC CGCGACGGAC GAGGGCGAGC TCGCGCTCGG CCGCAACCTG CTCGTCGCGT TCATGTCGTG GGAAGGCCAC AACTACGAGG ACGCGATCAT CCTCAGCCAG CGTCTGGTCC AGGACGACGT CCTCTCCTCG ATCCACATCG AGGAGCACGA GGTCGACGCC CGCGACACGA AGCTCGGCCC GGAGGAGATC ACCCGGGACA TCCCGAACGT CTCCGAGGAC GTCCTGGCCG ACCTCGACGA GCGCGGCATC ATCCGCATCG GCGCCGAGGT CAGCTCGGGC GACGTGCTCG TCGGCAAGGT CACGCCCAAG GGCGAGACCG AGCTCACCCC GGAGGAGCGC CTGCTGCGCG CCATCTTCGG CGAGAAGGCC CGCGAGGTCC GCGACACGTC CCTCAAGGTG CCCCACGGCG AGTCCGGCAC GGTCATCGAG GTCCGCACGT TCAACCGTGA GGACGGCGAC GAGCTGCCCG CCGGTGTCAA CGAGCTGGTC CGCGTGTACA TCGCCCAGCG ACGCAAGATC ACCGCGGGCG ACAAGCTCGC CGGCCGTCAC GGGAACAAGG GCGTCATCTC GACGATCCTC CCGGTCGAGG ACATGCCGTT CCTCGAGGAC GGCACGCCCG TCGACATCGT CCTCAACCCC ATGGGTGTCC CGGGACGAAT GAACGTCGGT CAGGTGCTCG AGGTCCACCT CGGGTGGATC GCGGCGCAGG GCTGGGACGT CGACCTCGCG ACGGAGGGCG ACCTCTCCTG GAAGGAGAAC GTCCCCGCGG TCGCGTCGAC GTCGAAGCCC CGCAACCCGG TCGCCACGCC CGTGTTCGAC GGTCTCCAGG AGAACGCCCT CTCGGGTCTG CTCCAGAGCA CCCTCCCGAA CCGCGACGGC GCACGCATGG TGCAGCCCGA CGGCAAGGCA CGCCTCTTCG ACGGCCGCTC CGGCGAGCCG TTCCCCGAGG CCGTGGCCGT CGGCTACATG TACATCTTGA AGCTCCACCA CCTGGTGGAC GACAAGATCC ACGCGCGCTC GACCGGTCCG TACTCGATGA TCACCCAGCA GCCGCTCGGC GGTAAGGCCC AGTTCGGTGG CCAGCGCTTC GGTGAGATGG AGGTCTGGGC CCTCGAGGCG TACGGAGCCG CGTACACCCT GCAGGAGCTC CTCACCATCA AGTCGGACGA CGTCCCGGGC CGTGTCAAGG TCTACGAGGC GATCGTCAAG GGCGAGAACA TCCCCGACTC GGGCATCCCG GAGTCCTTCA AGGTCCTCCT CAAGGAGATG CAGTCGCTGT GCCTGAACGT CGAGGTGCTC TCGAGCGACG GTGTCTCCAT CGAGATGCGC GAGTCCGACG ACGACGTGTA CCGCGCCGCT GAAGAGCTCG GTATCGACCT GTCGCGTCGC CCGAACGCAG CAGCGAGCAT CGACGAGATC TGA
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Protein sequence | MAASRTPSAP SADAIANRTA SRRVSFAKIF EPLEVPDLLG LQTDSFDWLL GNEKWRARVA AAMKLGTQDV PETSGLEEIF EEISPIEDFG SSMSLSFSNH RFEPPKHTAE ECKEKDFTYA APLFVTAEFF NYNTGEIKSQ TVFMGDFPLM TERGTFIING TERVVVSQLV RSPGVYFERA ADKTSDKDIF SAKIIPQRGA WLEFEIDKRD AVGVRVDRKR KQSVTVLLKA LGLTESEIRE EFAAFPAILD TLEKDNVTTE EEALVDLYRK IRPGEPPTVE AGRSLLENFY FNSKRYDLAK VGRYKVNKKL GIDAPLADSV LTVTDIVKTI KYLAALHADV TALDGVKNGE AVEVRVETDD IDHFGNRRIR AVGELIQNQV RTGLSRMERV VRERMTTQDV EAIAPQTLIN IRPVVASIKE FFGTSQLSQF MDQNNPLAGL THKRRLSALG PGGLSRDRAG MEVRDVHPSH YGRMCPIETP EGPNIGLIGS LASFGRINPF GFIETPYRKV ENGKVSDDVV YLTADDEDRY VIAQANTELN EDGSFRQERV LVRTKGGETD DVLGSNVDYM DVSPRQMVSV ATALIPFLEH DDANRALMGA NMQRQAVPLV RSEAPFVGTG MERRAAIDAG DVIVATKPGV VTEVSADLIV VANDDATTTS YRAAKFRRSN QGTSYNQRVL VDEGARVEVG SVLADGPATD EGELALGRNL LVAFMSWEGH NYEDAIILSQ RLVQDDVLSS IHIEEHEVDA RDTKLGPEEI TRDIPNVSED VLADLDERGI IRIGAEVSSG DVLVGKVTPK GETELTPEER LLRAIFGEKA REVRDTSLKV PHGESGTVIE VRTFNREDGD ELPAGVNELV RVYIAQRRKI TAGDKLAGRH GNKGVISTIL PVEDMPFLED GTPVDIVLNP MGVPGRMNVG QVLEVHLGWI AAQGWDVDLA TEGDLSWKEN VPAVASTSKP RNPVATPVFD GLQENALSGL LQSTLPNRDG ARMVQPDGKA RLFDGRSGEP FPEAVAVGYM YILKLHHLVD DKIHARSTGP YSMITQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEL LTIKSDDVPG RVKVYEAIVK GENIPDSGIP ESFKVLLKEM QSLCLNVEVL SSDGVSIEMR ESDDDVYRAA EELGIDLSRR PNAAASIDEI
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