| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_26640 |
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| Symbol | |
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| ID | 8634298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sanguibacter keddieii DSM 10542 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013521 |
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| Strand | - |
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| Start bp | 2968432 |
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| End bp | 2974878 |
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| Gene Length | 6447 bp |
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| Protein Length | 2148 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | |
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| Product | putative collagen-binding protein |
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| Protein accession | YP_003315402 |
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| Protein GI | 269795947 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.189167 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAGC AGATCACCCC CACACCCGCC GTCGGCCTCG GCGCCCCGAG CGTCCTCGTG
GAGCCCGGCG CGCACGCCCC GGCCGGACGG GCGGCGACCC TGCGGGTGCA CGCCCGCAAC
CTCGCCGACG GGCCCCGCGA CGTCACCGTC ACGGTCATGG GCCTCGACGA CGGCTGGTCG
CCCGAGCCCG TGCGGCTCCC GGCGGTCGAG CCCGACGCGA CGGTGTCGAC CGAGATCGAC
CTGCTCCCCG TGGTCGGTGC CGTCCCGGGC GACTACCCCT TCGTGGTGGT CGTGCAGTCC
GCAGCCCCCG GTGCCGGCCC GACGACCACC CTCGCGGAGA GTGTGCTGGT CGTCGACGCA
CCGAGCGAGG TGCTGCTGAC CGTCGAGCCC GCCGACTCAC GGATGCGCAT GCGACGCAGG
CTGTCGGTGG TCCTGTCGAA CACCGGCGTC GAGCCGGTCG AGCTCACCGT GAAGACCCAG
ACGTCCCGCG GCCTGCGTCT CGAGCTGCCG TCGCGCACGC TCACCGTCCC CGGGCGCCAG
ACCGTGCGGA TGTCGGCGAC GGCCCGCAAC CAGCGCCCGC AGCTCATGGG GCACCTCGAC
CGCAGGACCT TCTCCGTGGT CGCCCAGGGC CGCCAGGCAC CTGCCCGGTT CAGCGGCACC
GTCACCGCCC GCCCGCTCGT CAGCGCGGCG ATGATGCGAG TGGTCGGGCT CCTCATGGTC
GTGGTCCTCT GGGGCGGCGG GCTCCTCGTC GCGCTGCCCT GGTTCACCGA CCGTGCCGGC
GACCAGCCGG TGACCGCGCA GCCCGCGGCG ACCGTCGTGA CGGATCCTGC TGCCGGTCCC
GACGGCAGCG GCGGCACAGA AGGGGCCGCG GGCGGCTCAG GGGCAGACGG CTCCGGCGCC
CCCGGCGAGG ATGACGGCGT CCTGCCCGAC GCCGGCGTGC GGGTCGGCGG TGTCGTCACC
GCCGACGACC CCTCCGGCGT CCGGGTGCAG ATCGCCCCGG CGAGCATCAT CCCGACCACG
ACGCAGCAGA CCGCCGCCGG TACGCCGGCC GCCTCGGGCG GCGGCGGGGG AGCCGCACGC
GGGGCGGGCA CGTCCCGCGT CGTCCCTGCG GCGGTCGTGG CGGGGACGGG CACGTCGGGC
ACCCTCGCGT CCTCCGACGA CGCCACCTCG TCCTCGGGCA GCGCCCGTGC GATCACCAAG
ACCTCGGCGC TCGGGCTCCC GCTGGGCTCG ACCTCGGCCG CAGGTCAGTC GTCGACCGTC
TCCGCGGCGC GCAGCACCGA GACCGGCTCC GACGGCGCCT GGGCCTTCGC CGGGCTCGCC
CCGACGCTCA ACTACCTCGT CACCGTGTCC AAGCCCGGCT ACCAGACCGT CCGCCAGGTC
GTCTCCGGGG CCGAGGCGGC GGCAGCAGCG CTCGACGTCA CCCTCGTCGC GGGCGACGGC
AGCCTCTCCG GCGTCGTCAC CGGGCCTGAC GGCGCAGGCG CGGGCGGGGT GACGGTCGTG
CTGAGCGACG GCACCACGAC CGTGAGCACC ACGACGGCCA CGAGCGGCAC CGTCGGGTCC
TGGGCCGTCG ACGGCCTCTC GACCCCCAGC ACCTACCTCG TCACCGCGCA GGGTGCGGGA
CTCGGGGCGC AGTCCGTCCT CGTCACGCTC TCCGCGGGCG GCTCGGCGAC CGCACCCCTG
AGCCTGCAGG ACGGCGTCGC GACCCTCTCC GGGACCGTCA CCGGACCGGA CGCCCTCGGC
GCCGTCTCCG GGGTCGGCGG CGCGACGGTC ACCGCGACCG CCGGCGACAC CACCCGTACC
GCCTCGACCC TCACCTCCGG CCGGCCCGGC GCGTACAGCC TCGCCGACCT GCCGGTCCCG
GGCAGCTACA CGCTCACCGT CGAGGCACCC GGCTTCGCGA CCCAGACCCT CGAGCTCGAC
CTCGGGCCCG AGTCCTCGGC CGCCCCCGCG GACGTGCTGC TCGGCTCGTC GAGCGGCGTC
GCGCAGGGCA CCGTCCGCGA CACCGCAGGC ACCGCGCTCT CGGGCGCCGG GCTCAGCCTC
ACCAACGGCA CCGACGCCTA CAAGACGATG TCGACCTCCG ACGGCTCCGG CTCCTTCCGC
TTCAACGGCA TCGTCCCCGG CGAGTACGTG CTGTCCGCCG AGCTGTTCGG CCACCTCACC
GCGTCGACGA CCGTCACGGT CGCGTCGGGC GGGACCGTGG GCGCCGACCT CGTCCTCACC
CCGGTCGCCG GCGACGGCCT CGTCGACACG TCGCGCATCC GCGGGCGTGC GAGCGACGCC
CGGACCAACG GGCAGATCGA CTGCGTCGCG CTCGCCCCGG GCGAGGAGTG CCTCGTCACG
GTCTCGCTCA CCGCGCAGAA CCCCGACGGC ACGCAGCGCC AGGTGACGGT CACCTCGGAG
CCCGACCTCG AGTACGTCAT CCCCGCCGCC GACGACACCG GCCTGCTCCC CGGGCTCTAC
GAGCTCACCG TCTCCGCCCC CGGGTACGAG AGCTCGAGCG TCAAGGTCAA CGTGCCCATG
GCGCAGACCG TCTCGGCCGG GCAGGTCGCG CTGTTCCCGT CGCCGTCGCT CAGCGGGACG
GTGCTCACCC GCATCGGCGC CGTGCCGGAC GGGACCTGCG TCGTCGCGGT CGCCTCCGGC
CAGCCTGCGC CCACCGGGGG CTGCACCGCA CCCGCGCCGG ACACCTGCCA GGTCGACGGC
GGTCGCTGTG CCTTCACGGG CGTCAACGGT GGCTACACCA TCACCTCGAT GCCGGCGGGC
ACCTACACCG TGACGGTGCT CCCCGGCAGC GCGGAGTACC GCGTCTCAGG CACCATCCCT
CCCGTGACGC TCGTGCCCGG CGACGTCCGT CGCGTCGACG TGACCCTGGA CCGGCTCGCC
CGGCTGTCGG TCACGACCCT CGTGGACCGC GGCACCGGCG CCATCACGCC CGCCGCCGGG
GCTGTGGTGA CCCCGGTCCT GCTCGCCGGC TCCGGCAAGC CTGTCGTCCC GGGGGCACCG
GGGACGCCCG GGACGCCGGT GGTCTCGGTC GACGGTGTCG CGGCGCTGAG CATGCTCGAG
CCTGGGACGT ACCGCTTCGA CGTGACGTGG CAGGACGACG ACGGGGTCCA GCTCACAGGG
TCGATCGCCG GCATCGAGCT GGCCTTCAAC CAGGAGCGCA CGACGCAGCT CGTGCTCACC
CGCACGGTGC GGGTGTTCCA AGGCGCACTC ATGACCCAGC TGACCGCAGG CATCCAGACA
CCGGTCGAGG ACCGTGAGGT CGTGGTCACC GGGATCATCG GCTACGACGG CGTGACGCCC
GTCCGCTCGA GCGTCACGCT CGTCACCGAC GACGACGGCC AGTTCGCGAC CTCGGCGACG
CCCGACACGA GCGGCTACCT GCCGCTCGTG TCGGACAAGG TCGACGTGAC GGTCGCCGCG
AGGACGGAGG CTCCCTTCGA CTACAAGGCC CTCTCGCTCA CCGGGGTGGA CTTCGTCTCG
GGCACGTCCA CGATCATCGA GCTCCAGCCG GTCGGGCAGC CCTTCTCCGG GACGCTCACG
CTCGCCGGGG ACGGTCCGGA CGCGAGGGCA CCCGCCTCGC AGGTGCTCTT CGAGGTCGTC
TCCGGTCCGC CGGGCGCGTC CTCGGTGAGC ATTTCCGCGG TCACCACGGC CAGCGGCACG
TCCTTCCCGC TGCTGTGGCG GGACGCCAAC CAGCCTGCCA GCGGTGCGGG CACCCTCGCC
CGGCCAGGCA CCTACGTGGT CCGCGCGACT CTCGCGGGCC ACGAGCCTGT GCAGGAGACG
ATCGACGTGG TCGTCGAGAC GGGGAACGCC CCGGTGACCT TCAAGCTCGC CCGGTTCGGA
AGCCTCACCG TCGCGCCGGT CACGTGCTCA GAACCCCTCA CCGTGCCGCC GTGCGGGGAC
GTCGGGACGA CCCCCGTGCC CAGGGCCGAG ATCACGGTGA GCGGCAACGG CATCCAGCAG
ACCGCGACCC TGGCGCAGGG CACGCCCGAG GCGGAGTTCG GCGAGCTGCC CTCCGGGGAC
TACCGCGTCG TCGTGCGGGC CGCCGGCATG GCACGTCTGA CCACCACGCT CACCGTCAAG
GCCGAAGACA CCGACGCGCA GCCCGTCTTC CTCACGAGGC TCGGCACGAT CAGAGGGACC
GTGTGGTCGA CGACGGCGCG CGCCGGCGAC CCAGATGGCA CCAGACCGGT CCTCCGAAAG
CTCCCGGGAG CGGTCGTCAC GGCCACCGGC CCGGGGGGAG CGGAGTTCAC CGTGGTCACG
GACGCCGACG GGGCCTACTC GATCACCGGC ACGGCAGCCC TCGAAGGGCT GCAGACGGGC
AGGTGGAGCG TCCAGGCGCG CCTGGACGGC TACACGGCAC CGCCAGCCCA GACGGTGGAC
GTCACCGGAC CCGGCACGTT CGAGAAAGAC GTCACGATGC CGTTCACGCC CGTGACCGTC
ACGGTGTTCG TGGTGAACGA CCTCATCGAC GGCGAGGCCG TCCCGGGGCT CGACGTCGTC
CTGCAGGACG GCATCAGGTC CGTGCCCGCC ACGTGCCCGC CGGTCGCGAC AGGGTCAGCG
ACCACCACCT GCGACCGTGG CGAGTACCGG TTCCCCGACG TGCTGCCCGT GCAGTCGATC
CTGTCGATCT CCGGCGCGGG CTACCGGTCG TTGCAGGTGA GCATCACCCC ACCGGTGGGT
CAGCCGAACT CGGCGGTCAC CGTGCCACTC GTCGCGAACA CCAACGCCAT CGGCGGCATC
GTCACGGGGC AGCGCGGCTC GGGGACACCG GTCCCGCTCA AGGACGAGAC GGTGCGCCTG
ACCGCCGTGC CCGCGGCGCC GACGGACCCG GACGCACCGG TGGACCCGCC AGTCACGTCG
GACACCATGA CAGGGGTCGA CGGCAGCTTC CTGTTCCGCG ACCTCACCGA CGGTGCCTAC
GACATCTCGG TCGAGGCCGC GGGCTACAGC CCGGTGACCC GGCGGGTCAC CGTGGTCGGA
GGGCAGGCGG CCCTCGTGGA CCTCCGGCTG TTCCAGGTGA CCCGAGCCGT CACGGTCTCC
GTCACGTCGG GCTCCGACCT CACGGGCACG CTCGTGTCCC TCACGGCGCA GGACGGCACG
ACGCTGCCGG GCACCATCGC GGGGCAGCCC CTGGTCCGGT CCGGAGCGAC GTACACGACC
ATCTTCAACC AGGTGCCCGA GGGCGCGTGG ACGGCCACCT TCACGGGGGC GTCCGGGCAC
CCGTGGTCGA CCACCCGGGT CCTCGACGCC GGGGACACCA CCCTCGAGGC GACCATCGAC
GAGGTGCGGC TGCGTCTCGC GGCGACCGGG CCCGACAGCG GCGCGCAGCT GACAGTGACC
GTCGAGGGCA GCCCTTCGGA CACCGACGGT GCCATCGTCG ACCTCACGAG GACAGTCTCG
GTCGGGGCGT CGGCAGAGAC GCTCTACCTC CTCGCCGGCA CCTACGAGCT CACACCGAGC
ACGGTGGCCG GGGCGACCGT CTCCCCGGCG ACGGTGACGA TCGCACCGAG CGAGTCCGAC
CGTCTGGTGA CCTTCGCGGT CCAGAGCCCC AGCACGACCA CCCTTCCTGC GCTGACGGAC
TGGGAGATCG GCACCGCCAA GACCCTCGTC GCGACCGTGC GCGGGCCGCA GTCCTCGGCG
GCGACCGCGA CCGGGACTGT GACCTTCTCC CTCGCCGGGA CCGAGCTGGA CGTCGTGGCC
GTCGATGCGG CGGGCCGGGC GACGCTCAGC GGGACCCTCC CGGCCGGGAC CGTCCCGGGG
GCGACCGAGG TGACGGCGGT GTACTCCGGG TCGACGTCGC TCGCGGGCTC CCAGGCGTCC
AGGACGGTGA CCGTCACCGC GGCCGGGACC ACCACCACCC TGGCCGCCCC GGGACCCCTG
ACCGTCGGGA CCCCGACGAC TCTCAGCGCC ACGGTCTCCG CCCCGAGCGG GGGCACGGTC
ACGGGGTCGG TCGAGTTCCT CCGGGGCGGG GACGTCGTCG CCACCGGTAC CCTCGCCGGA
GGCACCGCGA CGGCTTCCTT CACCCCCACG AGCGCGGGTC CGGCGACGCT GTCTGCCCGC
TTCGTCGCCT CGGGCTCCTA CGCCGCGTCG ACGAGCGCGG GGCGCTCGGT CACGGCTGCG
AGGGGGCCGT CGACCACGAC GGCGACAGCG CCCGCTGCGG TCGGCGGTGA CGTCACGGCG
CGGGTCGCCT GGGGTGGGGC GCCGGCCACG GCCGGGACGG TGGAGGTCTC GAGCCCGGGA
GGACAGGTCT CCTGCCCTGC CGTCTCGCTG ACGGACGGCG TCGCGTCCTG CTCGACCGCA
GGGCTCCCCG CCGGTACCCA CACGATCACG GTCGTCTACA GCGGGACGGT CGACCGGCTC
GGGTCGCAGA CCACCGTCCA GGTCGTGGTG CCGGCGGCAC CGCCGGAGCC GGGAGAGACC
GAGGACCCGG ACGACGGGAC CCCGTGA
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| Protein sequence | MTEQITPTPA VGLGAPSVLV EPGAHAPAGR AATLRVHARN LADGPRDVTV TVMGLDDGWS
PEPVRLPAVE PDATVSTEID LLPVVGAVPG DYPFVVVVQS AAPGAGPTTT LAESVLVVDA
PSEVLLTVEP ADSRMRMRRR LSVVLSNTGV EPVELTVKTQ TSRGLRLELP SRTLTVPGRQ
TVRMSATARN QRPQLMGHLD RRTFSVVAQG RQAPARFSGT VTARPLVSAA MMRVVGLLMV
VVLWGGGLLV ALPWFTDRAG DQPVTAQPAA TVVTDPAAGP DGSGGTEGAA GGSGADGSGA
PGEDDGVLPD AGVRVGGVVT ADDPSGVRVQ IAPASIIPTT TQQTAAGTPA ASGGGGGAAR
GAGTSRVVPA AVVAGTGTSG TLASSDDATS SSGSARAITK TSALGLPLGS TSAAGQSSTV
SAARSTETGS DGAWAFAGLA PTLNYLVTVS KPGYQTVRQV VSGAEAAAAA LDVTLVAGDG
SLSGVVTGPD GAGAGGVTVV LSDGTTTVST TTATSGTVGS WAVDGLSTPS TYLVTAQGAG
LGAQSVLVTL SAGGSATAPL SLQDGVATLS GTVTGPDALG AVSGVGGATV TATAGDTTRT
ASTLTSGRPG AYSLADLPVP GSYTLTVEAP GFATQTLELD LGPESSAAPA DVLLGSSSGV
AQGTVRDTAG TALSGAGLSL TNGTDAYKTM STSDGSGSFR FNGIVPGEYV LSAELFGHLT
ASTTVTVASG GTVGADLVLT PVAGDGLVDT SRIRGRASDA RTNGQIDCVA LAPGEECLVT
VSLTAQNPDG TQRQVTVTSE PDLEYVIPAA DDTGLLPGLY ELTVSAPGYE SSSVKVNVPM
AQTVSAGQVA LFPSPSLSGT VLTRIGAVPD GTCVVAVASG QPAPTGGCTA PAPDTCQVDG
GRCAFTGVNG GYTITSMPAG TYTVTVLPGS AEYRVSGTIP PVTLVPGDVR RVDVTLDRLA
RLSVTTLVDR GTGAITPAAG AVVTPVLLAG SGKPVVPGAP GTPGTPVVSV DGVAALSMLE
PGTYRFDVTW QDDDGVQLTG SIAGIELAFN QERTTQLVLT RTVRVFQGAL MTQLTAGIQT
PVEDREVVVT GIIGYDGVTP VRSSVTLVTD DDGQFATSAT PDTSGYLPLV SDKVDVTVAA
RTEAPFDYKA LSLTGVDFVS GTSTIIELQP VGQPFSGTLT LAGDGPDARA PASQVLFEVV
SGPPGASSVS ISAVTTASGT SFPLLWRDAN QPASGAGTLA RPGTYVVRAT LAGHEPVQET
IDVVVETGNA PVTFKLARFG SLTVAPVTCS EPLTVPPCGD VGTTPVPRAE ITVSGNGIQQ
TATLAQGTPE AEFGELPSGD YRVVVRAAGM ARLTTTLTVK AEDTDAQPVF LTRLGTIRGT
VWSTTARAGD PDGTRPVLRK LPGAVVTATG PGGAEFTVVT DADGAYSITG TAALEGLQTG
RWSVQARLDG YTAPPAQTVD VTGPGTFEKD VTMPFTPVTV TVFVVNDLID GEAVPGLDVV
LQDGIRSVPA TCPPVATGSA TTTCDRGEYR FPDVLPVQSI LSISGAGYRS LQVSITPPVG
QPNSAVTVPL VANTNAIGGI VTGQRGSGTP VPLKDETVRL TAVPAAPTDP DAPVDPPVTS
DTMTGVDGSF LFRDLTDGAY DISVEAAGYS PVTRRVTVVG GQAALVDLRL FQVTRAVTVS
VTSGSDLTGT LVSLTAQDGT TLPGTIAGQP LVRSGATYTT IFNQVPEGAW TATFTGASGH
PWSTTRVLDA GDTTLEATID EVRLRLAATG PDSGAQLTVT VEGSPSDTDG AIVDLTRTVS
VGASAETLYL LAGTYELTPS TVAGATVSPA TVTIAPSESD RLVTFAVQSP STTTLPALTD
WEIGTAKTLV ATVRGPQSSA ATATGTVTFS LAGTELDVVA VDAAGRATLS GTLPAGTVPG
ATEVTAVYSG STSLAGSQAS RTVTVTAAGT TTTLAAPGPL TVGTPTTLSA TVSAPSGGTV
TGSVEFLRGG DVVATGTLAG GTATASFTPT SAGPATLSAR FVASGSYAAS TSAGRSVTAA
RGPSTTTATA PAAVGGDVTA RVAWGGAPAT AGTVEVSSPG GQVSCPAVSL TDGVASCSTA
GLPAGTHTIT VVYSGTVDRL GSQTTVQVVV PAAPPEPGET EDPDDGTP
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