Gene Sked_16250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_16250 
Symbol 
ID8633261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp1820605 
End bp1823361 
Gene Length2757 bp 
Protein Length918 aa 
Translation table11 
GC content68% 
IMG OID 
Productaconitase 
Protein accessionYP_003314394 
Protein GI269794939 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00478324 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCAGCG TGGACACGTT CGGGTCGAAG GGAACTCTCG AGGTCGATGG CACCTCGTAC 
GAGATCTTCC GGCTCGCCGC AGTACAGGGG ACGGACAAGC TTCCGTTCAG CCTCAAGGTT
CTCGCCGAGA ACCTCCTCCG CACCGAAGAC GGCGCGAACA TCACCGCTGA CCACGTCAAC
GCCCTGGCCT CCTGGGACCC CGACGCTCAG CCGGACACCG AGATCCAGTT CACCCCTGCG
CGCGTCATCA TGCAGGACTT CACCGGTGTG CCCTGCGTCG TCGACCTCGC CACCATGCGC
GAGGCCGTCG CCGACCTCGG CGGAGACCCC GAGCGCGTGA ACCCGCTCGC CCCCGCCGAG
CTGGTCATCG ACCACTCCGT GCAGATCGAC GTCGCCGGCC GCGCCGACGC CTTCGAGCGC
AACGTCGAGC TCGAGTACGA GCGCAACCGT GAGCGCTACC AGTTCCTGCG CTGGGGCCAG
ACGGCCTTCG ACGACTTCAA GGTCGTCCCC CCGGGCACCG GCATCGTGCA CCAGGTCAAC
ATCGAGTTCC TGGCCCGCAC GATCATGACG CGCGAGGTGG ACGGCGTCCT CCGCGCCTAC
CCCGACACCT GCGTCGGCAC CGACTCGCAC ACGACGATGG TCAACGGCCT CGGCGTGCTC
GGCTGGGGCG TCGGCGGCAT CGAGGCCGAG GCCGCGATGC TCGGCCAGCC CGTGTCGATG
CTCATCCCGC GCGTCGTCGG CTTCAAGCTC ACCGGTCAGA TCCCCTCGGG CGTCACCGCG
ACCGACGTGG TCCTCACCAT CACGCAGCAG CTGCGCCAGC ACGGCGTCGT CGGCAAGTTC
GTCGAGTTCT ACGGCGAGGG CGTCGCGGCG GTCCCGCTCG CCAACCGCGC GACCATCGGC
AACATGAGCC CCGAGTTCGG CTCGACCGCG GCGATCTTCC CGATCGACGG CGTCACGCTC
GACTACCTGC GCCTCACCGG CCGTTCCGAG GAGCAGCTCG CGCTCGTCGA GGCGTACGCC
AAGGAGCAGG GCATGTGGCT CGACCCGTCG GCCCCGACGT ACGTGGAGCC GAAGTTCTCC
GAGTACCTCG AGCTCGACCT CTCGACCGTC GTCCCCTCGA TCGCCGGCCC GAAGCGCCCC
CAGGACCGCA TCGAGCTCTC GAACGCCAAG TCCGCCTTCG AGCGCGACCT GCCGACGTAC
GCGCCCGAGG TCATCGACGC CGTCGACCAG GCGGAGAAGG AGTCCTTCCC CGCCTCCGAC
GCCCCCGCCG TCGGCACCCA GGTCCGCCGC GTCGTCGACG TCACCGACAC CCAGGGCCGG
TCCTTCGGGC TGTTCCACGG TGCGGTCGCG ATCGCGTCGA TCACCTCCTG CACCAACACG
TCGAACCCGT CGGTCATGAT GGCCGCCGCG CTCGTCGCCA AGAAGGCCGT CGAGAAGGGC
CTCACGGCCA AGCCGTGGGT CAAGACCTCC ATGGCCCCGG GCTCGCAGGT CGTCACGAAC
TACTACGAGA AGGCCGGCAT GTGGCCTTAC CTCGAGAAGC TCGGCTTCCA CCTCGTCGGC
TACGGCTGCG CCACCTGCAT CGGCAACTCC GGCCCGCTCG ACGAGAACAT CTCGACCGCG
GTCAACGACC ACGACCTCGC CGTCGTCTCG GTGCTCTCGG GCAACCGCAA CTTCGAGGGT
CGCATCAACC CCGACGTCAA GATGAACTAC CTCGCCTCGC CGCCGCTCGT CATCGCGTAC
GCGCTCGCCG GGACCATGGA GTTCGACTTC GACCACGAGC CCCTCGGGCG CTCCGAGGAC
GGCTCGCCGA TCTTCCTCAA GGACATCTGG CCCACGCCGG AAGAGGTCCA GGAGACCATC
GACGCGTCGA TCGACCGTGC GATGTTCACC AAGGACTACG CCGACGTCTT CACCGGCGAC
GAGCGCTGGC GCGCCCTGCC GACCCCGGTC GGCAACACCT TCGAGTGGGA CGCGGAGTCC
ACCTACGTCC GCAAGCCCCC GTACTTCGAC GGCATGAGCC TCACGCCGTC GCCCGTCACG
GACATCTCCG GTGCGCGCGT CCTCGCCAAG CTCGGCGACT CCGTCACCAC CGACCACATC
AGCCCTGCTG GTGCGATCAA GCCGGGCACC CCGGCCGCGG AGTACCTCGC TGGCAACGGC
GTCGAGCGTC GCGACTACAA CTCCTATGGC TCGCGCCGCG GGAACCACGA GGTGATGATC
CGCGGGACCT TCGCGAACAT CCGCCTGCGC AACCAGCTCC TGGAGAACGT CGAGGGTGGC
TACACCTTCA ACTTCGTCAC CAACGAGCAG TCGTTCATCT ACGACGCTGC GCAGGACTAC
GCCGCACAGG GCACCCCTCT GGTGATCCTC GGTGGCAAGG AGTACGGCTC CGGCTCGTCC
CGCGACTGGG CGGCCAAGGG CACCGCGCTC CTCGGCGTCA AGGCCGTCAT CACCGAGAGC
TTCGAGCGTA TCCACCGCTC GAACCTCATC GGCATGGGAG TCCTCCCGCT GCAGTTCCCG
GTCGGCGAGA ACGCCGAGTC CCTCGGGCTC GACGGCACCG AGACCTTCGA CATCTCCGGT
GTCACGGTCC TCAACGACGG CTCGACCCCG TCGACCGTCA AGGTCGCGGC GACGAAGACC
GACGGCACGT CCGTCGAGTT CGACGCCGTC GTGCGCATCG ACACCCCGGG CGAGGCGGAC
TACTACCGCA ACGGCGGGAT CCTCCAGTAC GTGCTCCGGT CGCTCGTCCA GAAGTGA
 
Protein sequence
MSSVDTFGSK GTLEVDGTSY EIFRLAAVQG TDKLPFSLKV LAENLLRTED GANITADHVN 
ALASWDPDAQ PDTEIQFTPA RVIMQDFTGV PCVVDLATMR EAVADLGGDP ERVNPLAPAE
LVIDHSVQID VAGRADAFER NVELEYERNR ERYQFLRWGQ TAFDDFKVVP PGTGIVHQVN
IEFLARTIMT REVDGVLRAY PDTCVGTDSH TTMVNGLGVL GWGVGGIEAE AAMLGQPVSM
LIPRVVGFKL TGQIPSGVTA TDVVLTITQQ LRQHGVVGKF VEFYGEGVAA VPLANRATIG
NMSPEFGSTA AIFPIDGVTL DYLRLTGRSE EQLALVEAYA KEQGMWLDPS APTYVEPKFS
EYLELDLSTV VPSIAGPKRP QDRIELSNAK SAFERDLPTY APEVIDAVDQ AEKESFPASD
APAVGTQVRR VVDVTDTQGR SFGLFHGAVA IASITSCTNT SNPSVMMAAA LVAKKAVEKG
LTAKPWVKTS MAPGSQVVTN YYEKAGMWPY LEKLGFHLVG YGCATCIGNS GPLDENISTA
VNDHDLAVVS VLSGNRNFEG RINPDVKMNY LASPPLVIAY ALAGTMEFDF DHEPLGRSED
GSPIFLKDIW PTPEEVQETI DASIDRAMFT KDYADVFTGD ERWRALPTPV GNTFEWDAES
TYVRKPPYFD GMSLTPSPVT DISGARVLAK LGDSVTTDHI SPAGAIKPGT PAAEYLAGNG
VERRDYNSYG SRRGNHEVMI RGTFANIRLR NQLLENVEGG YTFNFVTNEQ SFIYDAAQDY
AAQGTPLVIL GGKEYGSGSS RDWAAKGTAL LGVKAVITES FERIHRSNLI GMGVLPLQFP
VGENAESLGL DGTETFDISG VTVLNDGSTP STVKVAATKT DGTSVEFDAV VRIDTPGEAD
YYRNGGILQY VLRSLVQK