Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sked_11620 |
Symbol | |
ID | 8632798 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sanguibacter keddieii DSM 10542 |
Kingdom | Bacteria |
Replicon accession | NC_013521 |
Strand | + |
Start bp | 1346219 |
End bp | 1347139 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | |
Product | ABC-type sugar transport system, permease component |
Protein accession | YP_003313939 |
Protein GI | 269794484 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00242068 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0915178 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCACCC AGGCCACAGC CTCCGAGAGG CCTTCTGCCC GCACCGCACC CAGCACGCCT CGGAAGCGCC GCGACCGGCG CCCCAGCAGC GACAGCCGCC GGCTCACCCC ACAGCGCTTC GTGCTCTACC TGACGCTCAC CGTCCTCATG GGCGTGTTCG TCATGCCGCT GCTCTTCGCG CTCTCCGGCT CCTTCAAGGA GCGCGGCGAG ATCTTCACGA ACCCGCTGCA GCTGGTCCCG GGCTCGCCGA CACTCGAGAA CTACCGGAAC CTGCTCACCC AGCAGCCCTT CTGGTCGTGG TTCGCCATGA GCACCGCCGT GGCGACCATC GCGACGGTCG TGTCCGTCTT CGTCTGCGCG CTCGCCGGCT TCGCCTTCGC CAAGTACCGG TTCCGCGGCA AGGGGCCGCT CTTCACCATC ATGTTCAGCT CGTTGTCGAT CCCCTTCGCG GTGATCCTAG TGCCGCTGTT CGTCCTGCTC GTGAAGTCCG GCCTCGGCAA CCCGTTCTTC GCGCTCATCG TGCCGTGGGT CGCCCCGGCC TTCGGGATCT TCATGATGCA GCAGTTCATC GTGCAGTCTG TCCCGGACGA GCTCCTCGAG GCCGCGCGCA TCGACGGCAC GTCCGAGTTC GGGATCTTCT GGCGCGTGGT GCTCCCGCTG CTGCGGCCCT CCCTCGGGGC GCTCGGGGTG TGGAGCTTCC TGCAGAGCTA CAACAGCTTC CTGTGGCCGC TCGTCATCGT GTCCGACGTC GACCAGTACA CGCTGCCGCT CGGCCTCAAC ATCCTCTACG GCTCCGAGAA CCGCGCCTTC GACCTGGTCC TGGCCGGGTC GGTCCTCGCC TCGGTGCCGA TGATCATCGT CTTCCTGCTG CTGCGCAAGC AGCTGCTCGA AGGTCTGTCC GCCGGGGCCG TCAAGGGCTG A
|
Protein sequence | MTTQATASER PSARTAPSTP RKRRDRRPSS DSRRLTPQRF VLYLTLTVLM GVFVMPLLFA LSGSFKERGE IFTNPLQLVP GSPTLENYRN LLTQQPFWSW FAMSTAVATI ATVVSVFVCA LAGFAFAKYR FRGKGPLFTI MFSSLSIPFA VILVPLFVLL VKSGLGNPFF ALIVPWVAPA FGIFMMQQFI VQSVPDELLE AARIDGTSEF GIFWRVVLPL LRPSLGALGV WSFLQSYNSF LWPLVIVSDV DQYTLPLGLN ILYGSENRAF DLVLAGSVLA SVPMIIVFLL LRKQLLEGLS AGAVKG
|
| |