| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_4006 |
|---|
| Symbol | |
|---|
| ID | 4257864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 4754769 |
|---|
| End bp | 4755782 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638124695 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_740040 |
|---|
| Protein GI | 114049490 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAA CGCCCCTAAA CTTTCCAAGG GAAGAGTTTT CCAAGGTAGC TTTTTCAACG
GAACACAATT TAAATACTTC TGAACAGCAA GCCTTCTGGC AAACCGTTGT CCAAGACACA
CTCAAAACGT CCGATGGATT AACCTTGGCC TACATGATGG TCAAGCATCC CAAGGCCCAT
GCCAGCATAG TCATCAGTAG TGGCCGGGTT GAGTCCTACT TAAAGTATCA AGAACTCGTT
TTTGATTTGT ACCAGCAAGG CTATTCGGTA TTTGCTATCG ATCACCGCGG CCAGGGATTA
TCGAGCCGCA TGACGGCCAC CCCCCATCAA GGCCACGTGC GACGATTCAA CGACTATATC
GACGACTTTG CCCTGTTTAT GCAAACCGTT GTACTCAAAC ATGCCACTTC GCCACTGTTC
TTGCTCGGGC ATTCTATGGG CGGCGCTATC GGCACCTTGT ATCTCAAACA ACATCCCGAT
GTGTTTACGG CGGCAGCATT CTCCGCCCCC ATGTACGGCA TTAAGTTACC TATGCCCAAA
GGGTTTGTCC GTTGGCTTGC GAGTAAGCTC GATGCCAGTC TCAACGGTGG AGAGCCTAAC
TATGTCCTCA GCGGGCAAAA CTATAAGGCA GCTCCCTTTA AGGGCAATGA TCTCACCCAT
TGCCAGAGTC GTTATCAAGC CTACCGAGAG TTGTACGATG CGGCGCCAAA GCTGCAATTA
GGCTCACCCA CTAACCGCTG GTTGACTGAA TCCTTAGATG CGGCCGATGC CTGTGTCTTG
GCCACAGCAC ATATCCGTAC GCCTATTCTG ATCCTGCAAG CCAGTGAGGA TAAGATCGTC
GACAATGCTG CACAAAATCT GGCGGTAAGC TCAAATTGCC AATTAAAGGT GATTGCAGGG
GCTGCCCATG AGATTTTTAT GGAGAAAGAT AGCTACCGTA ATCAAGCGCT TAATTACGCG
CTCGACTTTT TTAAACGCTA CGCAACAAGG GACGTGGACA AACAAGCTGT TTAA
|
|---|
| Protein sequence | MSQTPLNFPR EEFSKVAFST EHNLNTSEQQ AFWQTVVQDT LKTSDGLTLA YMMVKHPKAH
ASIVISSGRV ESYLKYQELV FDLYQQGYSV FAIDHRGQGL SSRMTATPHQ GHVRRFNDYI
DDFALFMQTV VLKHATSPLF LLGHSMGGAI GTLYLKQHPD VFTAAAFSAP MYGIKLPMPK
GFVRWLASKL DASLNGGEPN YVLSGQNYKA APFKGNDLTH CQSRYQAYRE LYDAAPKLQL
GSPTNRWLTE SLDAADACVL ATAHIRTPIL ILQASEDKIV DNAAQNLAVS SNCQLKVIAG
AAHEIFMEKD SYRNQALNYA LDFFKRYATR DVDKQAV
|
|---|
| |