Gene Shewmr7_3965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3965 
Symbol 
ID4255970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4708252 
End bp4710387 
Gene Length2136 bp 
Protein Length711 aa 
Translation table11 
GC content50% 
IMG OID638124654 
Productperiplasmic sensor signal transduction histidine kinase 
Protein accessionYP_739999 
Protein GI114049449 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00131359 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGTTTT TTACTCACTT TTTTGGTGTC AGTTGGCAGC AAATGCAGGC CAAAGTGCGT 
TATCGCATTC TGATCCTCAC CTTGCTGCCG ATTTTGCTCA CCTTGGTGAG TTTAGTGTTT
ATCACTATTT ACTGGAATAT CAGTTACACA GGCAAGCAAC TGTTTATGAA AGTAAAAGCC
GATCTGGCTG TGGCTGAAAA TACCCTGCAA CAGGTGCAAG TTCGTCAGGA GAAACAGCTC
GAGAGAGTAA TGACCTCATG GACTTTTCAA AATGATTTTC GGCCCATTCT CACGGGTGAG
TTGGCCCACA GGGCGAGCAT CGATGCCTTT TTAAATGAGC AAAAAAAGCA ACTCGATCTG
GATTTTCTAA GGCTTGTCAG TGTGGCCGAG GCCGCGTCAG ACCCTGATTT ACGACAAATT
TTACCGAAAA TGGGTGGTCT TTTACCCTAT TCGGGGCTGA TGGTGTTATC ACCTGAGCGT
TTGGCGCGGG TTGATCCGGA TTTAGCCCAA AGGGCGGCGA TTCCCTTACT AGCGACATTG
CGGGCGCAAA GCCCGAATAA ACAAGTGGAA GACCGTGGTC TACTGAGCCG CAGTTTGCTG
CCGATCCCCG ATTTTGAGGG CAAAGTGGCT TGGTATCTCG ATGGCGGCGT GCTGTTTAAT
CGGGATACGC GCATCGTCGA CCATATCCGC GACCTCGTGT ACGACAAGGG CACGTTGCCG
GAGCGTTCCA TCGGTACTGT GACCATTTTC CTCGACAATA TTCGTGTCTC AACCAACGTG
CCTTTGCATT TTTTCCCACA GTCAAATGAA TCCCAAGGGC GGGCACTCGG CAGTTTAGTG
TCGGAGGAAG TGCGCGAAAA AGTGCTGAAT CACGGTGAGT TATGGGTCGA TCGCGCCTTT
GTGTTTAACG ATTGGTTTAT TTCCGCCTAT GCGCCCTTAG AAGATATCCG TGGGCAACGT
GTCGGAATGA TCTACACTGG ATTCTCAGAA TCGCCCTTTA TTCATAACTA CCTGCTTAAT
ATCATCGAGT TAGGCACGAT TCTTATGCTG GTGCTGCTGA TCTCCGGCTT GTTGGTTTAC
CGCGGCGCGT ACAGCTTGTT GCAACCGATT GAGCGCATTC ATCATGTGGT GCAAGCGGTG
CAGTCTGGTC GCAATGTGCG TATTGGTGCC TTGGGGCTGG ACAGGGATAA CGAATTGTCG
AATCTTGCCG AGCAGTTCGA CCGTATGCTC GACTTATTGC AGCGGCGCAA CGCGCAAATC
CAATCCGCGG CCGAACAACT CGAGATGAAG GTCGAGGAGC GGACTCGTAG CCTGCAGGAT
AAGACTTTGG AATTGCAGCG CAACGTGGCG CTACTCAATG AGACTCGTCA GCAGTTAGTG
ACCAATGAAA AGTTAACCGC GCTGGGTGAG CTAACCGCAG GGATTGCCCA TGAGATCAAT
AATCCAACGG CGGTGATCCT CGGCAATATG GAGCTGCTGC GTTATGAGCT TGGAGATAAT
GCCGAGTCGG TAAAAGAGGA AATCGACCTT GTTATCCAAC AGGTTGGCCG TATTAGCACT
ATTATCCGCA GCCTGCTGCA ATACAGTCGT CCTGGTGAGT TTAACGCTCC CTTAGAGATG
CATCCAATTA CGCCTATCAT CGAGGAAATG CTGGTATTAG TACGGCACTC GATTCAAAAA
CAAGAAGTGG TGCTGATAAC TGAACTGAAC GCCAGCTGCC CAGTGCAGGT TAACCGCCCG
CAGTTGCTGC AAGTGCTGAT TAACCTTGTG GTTAACGCCG CCCATGCGAT GGATGGTAAG
GGCAGGATTT GGGTGCGAAC CTATGATTGG CTACAGCAAG ATATGCCGAT TGGGGTGAAA
ATTGAGGTCG AGGACGAAGG TTCGGGGATT GCGCCTGAGC AGCTAGGGCG GATTTTTGAT
CCCTTCTACA CCACACGTAA AGACGGCACA GGCCTTGGAT TATCTCTAAG TTACGGCATT
ATCAAGCGTA TCGGCGGCAC CATAGAAGTG AGTTCTGTAT TGGGTAAGGG GTCTATCTTC
ACCATTGGTT TGTACCATGA GGCGAAGGAA GATCAGCAAA ACAACCCCTA CGATGGCTTA
CATTTTTCCG GCCAAAGCAC CGAAATGTCA TCTTAG
 
Protein sequence
MSFFTHFFGV SWQQMQAKVR YRILILTLLP ILLTLVSLVF ITIYWNISYT GKQLFMKVKA 
DLAVAENTLQ QVQVRQEKQL ERVMTSWTFQ NDFRPILTGE LAHRASIDAF LNEQKKQLDL
DFLRLVSVAE AASDPDLRQI LPKMGGLLPY SGLMVLSPER LARVDPDLAQ RAAIPLLATL
RAQSPNKQVE DRGLLSRSLL PIPDFEGKVA WYLDGGVLFN RDTRIVDHIR DLVYDKGTLP
ERSIGTVTIF LDNIRVSTNV PLHFFPQSNE SQGRALGSLV SEEVREKVLN HGELWVDRAF
VFNDWFISAY APLEDIRGQR VGMIYTGFSE SPFIHNYLLN IIELGTILML VLLISGLLVY
RGAYSLLQPI ERIHHVVQAV QSGRNVRIGA LGLDRDNELS NLAEQFDRML DLLQRRNAQI
QSAAEQLEMK VEERTRSLQD KTLELQRNVA LLNETRQQLV TNEKLTALGE LTAGIAHEIN
NPTAVILGNM ELLRYELGDN AESVKEEIDL VIQQVGRIST IIRSLLQYSR PGEFNAPLEM
HPITPIIEEM LVLVRHSIQK QEVVLITELN ASCPVQVNRP QLLQVLINLV VNAAHAMDGK
GRIWVRTYDW LQQDMPIGVK IEVEDEGSGI APEQLGRIFD PFYTTRKDGT GLGLSLSYGI
IKRIGGTIEV SSVLGKGSIF TIGLYHEAKE DQQNNPYDGL HFSGQSTEMS S