Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3962 |
Symbol | |
ID | 4255967 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4705802 |
End bp | 4706527 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638124651 |
Product | hypothetical protein |
Protein accession | YP_739996 |
Protein GI | 114049446 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0307 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATCAT TTCTTGCGGC CTTGTGTTTT AGTTTATTGA GTCTGTGTGC CTACGCGACA CCAGCTAAGC CCGTGGTGAT CCATCTGGTC ACGGCTTCGT GGCAGGGTTT CGCGGATCCC GATGAGACGG GTTATTACTT TGATATCCTT CGCCGGGTGT TTCCGGCCCC CGATTGGCAA CTCGATGTGC AGTTTATGCC CTTCGCCCGC ACGCTTTATC TGGTTGAAAC TAATAGAGTC GATATGGTCC TCAGCGTCTA CAAAGGGGAT GTAAAAAACA GTTTGCTGAG TGAAAACCCC GTTGAACTCG ATTCTATCGA TGCCGCTGTT ACCCCTCAAA TTTCCGCGAC TTGGTCGGGG ATGGAGAGCC TATCCCATAA GAAAGTGCAA GCCATGCTGG CCTATCGCTA TAACATGCTG ACGACCACTC CCATGTTTTA TGAGGAAGGC AGTGATATTT TAAACATGCT AAATAGTGTG AATGCGGGGC GCACCGATGC TGTGCTGGAT TACAGAAAGA ATATCGAGGC TCTCGTCCCT CAGTTGAAGG CGCCGCAGCA GTTTGTGATT ATTCAAGGGG TGTTAAAAGC CGAAACTTAT TTCGCCTTTG CTAACACAGA AAAGGGGAGA ATGTTAAAAC AACATTTTGA TATTGAACAT AAAAAACTGA TTGATTCCGG TGAGCAAGAT CGACTTTATG CAGAGACAAA AGCAAAGGGT TTTTAG
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Protein sequence | MRSFLAALCF SLLSLCAYAT PAKPVVIHLV TASWQGFADP DETGYYFDIL RRVFPAPDWQ LDVQFMPFAR TLYLVETNRV DMVLSVYKGD VKNSLLSENP VELDSIDAAV TPQISATWSG MESLSHKKVQ AMLAYRYNML TTTPMFYEEG SDILNMLNSV NAGRTDAVLD YRKNIEALVP QLKAPQQFVI IQGVLKAETY FAFANTEKGR MLKQHFDIEH KKLIDSGEQD RLYAETKAKG F
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