Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3774 |
Symbol | |
ID | 4255358 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 4484959 |
End bp | 4485876 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638124461 |
Product | LysR family transcriptional regulator |
Protein accession | YP_739810 |
Protein GI | 114049260 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGATA GACTACAAGC CATGCAAATT TTTATGCGGG TGGCTGAATT AGAGAGTTTT ACTCAAGCCA GTATCAGCCT AGGCCTGTCG AAAACCCATG TGTCGAATGT CGTAGCCCAG TTCGAAACCG CTCTAGGCGC ACGTTTACTA CAACGAACCA CTCGAACGGT GCGTCTCACT CAAGATGGCA TAAGTTGTTA TGAACGCTGT AAAAACTTGC TCACCGACTA TCAAGAATTA GAAAGCCTTT TCCAACTGCA GGCGACGCAA GTTTCGGGTC GCTTAAGAGT CGATATGTCC ACAGGAATTG CCCGAAACTT AGTGCTTCCC CATCTTCCTG ACTTTATTGA GCAATATCCG CAAATTGAGT TGGAGCTAAG CAGTACCGAC CGCAAGGTCG ATATCGTCGC CGAAGGTTTT GACTGCGTGA TCCGCGTTGG TAGCGTGCAG CAAGAAGGTG TTATCGCTAA GAAGATTGGC TACTTTAAGA TGCTGAACTG CGTTAGCCCA AGCTATATCG CAAAATACGG TAAACCATCG AGTTTAGAAG AGCTTAGCCA AGGGCATAAG CTTATCCATT ACGTTGGCCA ATTGGGCGGC AGCGATTCAG GATTTGAGTA TCTAAGCCAA GATAATCACG AACTCTGCGC CCTAGCCTTA CCAAAGCTAA TCACAGTCAA TAATGCCGAT GCCTACAGCG CGGCCTGTCT GGCGGGTTTA GGGATTATTC AAGCGCCAAA TATTGGGGTG GCAAAATATC TTCAAACTGG CGAACTGATA GAGATCTTGC CAGATTACCC TGCGCCCTCA ATGCCTGTGA GCTTGCTCTA TCCCCATAGA CGCCATCTTT CAAAGCGTCT TCAGGTATTT ATGGCTTGGT TAACCGAATT GCTAACGCCT TTTTTAGTAT CGCGTTAA
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Protein sequence | MQDRLQAMQI FMRVAELESF TQASISLGLS KTHVSNVVAQ FETALGARLL QRTTRTVRLT QDGISCYERC KNLLTDYQEL ESLFQLQATQ VSGRLRVDMS TGIARNLVLP HLPDFIEQYP QIELELSSTD RKVDIVAEGF DCVIRVGSVQ QEGVIAKKIG YFKMLNCVSP SYIAKYGKPS SLEELSQGHK LIHYVGQLGG SDSGFEYLSQ DNHELCALAL PKLITVNNAD AYSAACLAGL GIIQAPNIGV AKYLQTGELI EILPDYPAPS MPVSLLYPHR RHLSKRLQVF MAWLTELLTP FLVSR
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