| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3720 |
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| Symbol | |
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| ID | 4254860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 4428358 |
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| End bp | 4430595 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638124408 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_739757 |
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| Protein GI | 114049207 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00118596 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0278628 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAAGT CTATCGGGCC GATAAGCCTA GTCACCGCCG CAGTTATCTG CCAACTGGGG
CTTGTTAATG TGGCAACAGC CGCTGAAAAC GATATGGAGC GCATGGTGGT CTCCGCCACC
CGCTCACCGA CCCAAATCAG CGATCTCTCC AGCACTGTGT GGATCATTGA CGAAGCCAGC
ATTCGCGAGC AAACCGATAG CGGCAAAGGT ATTAAGGAAA TGCTCGCCGC CTTAGTGCCG
TCGATGGATG TGTCCAGCCA AGGGCGCACC AACTTTGGCC AAAATATTCG CGGTCGCGCC
ATGGTGGTCC TAATCGATGG CGTGTCGATG AACACCTCCC GCAGTATCAG CCGCCAGCTC
GACAGTATCG ATCCATTCAA TATTGCCCGC ATCGAAGTGC TCGCTGGCGC GTCGGCTATC
TATGGAGGTG GCGCACTGGG CGGTGCCATT AATATTGTCA CTAAAAAAGC AGCTGACAGC
AGTGATACCT TCGAAGCCGA AGCGGGATTC AAATCCGGCT TTAATAGCAG TGATGATGTA
GATTACCGCA CCGCACTGGC GGTGACCGGA GGCAGCGATT CGCTTAAAGG GCGCTTTAGT
ACCGCTTGGC AGGAAAACGG CCAATGGTTT GATGGCAGTA GCAACCCTGT GATACTGGAT
ATTACCCAAA CCGGAATGCA GTACACCCAA GGCTATGATT TAATGGCGAA TATGGATTGG
CAGCTTGCCA ATGACGCCAA CCTCAGTGCC ATGGCGCAAT ACTATCGCAA CGGTTCAGAC
GATGAACATG GTCTGTATAT GGGTGAGAAC TTCTCAGGCG TCACTGGTGA TGCCTCAGTG
CTCGAAACCC GTAAGGGATT AGACGCTGAC CGCAGCCCCG CCACCGAGCG CACTTTGCTG
AATCTGTCCT ACTCCCAGAA TGAGTTTCTT GGTCAAACCC TGTATTTACA AGGCTTTTAT
CGCAAAGAGA ATCTGGATTT CCACCCGTTC CCCTATGTCA ATGAAACCAG CGGCGTCTAC
AACTTCTCAG CATCGGCCCA AAATACCAAC ATCTATGGTT TGAAGGCGGT CGTGGAATCC
AAGCCCGTCG ATAGCCTCAC TCTTACCTGG GGACTGGATT GGGATAAAGA AAGTTTTGAT
TCGAGCCAAA TGAGCTTCGA CCTCGATGCC GCCAACCAAC ACGGCGGCTT AGTGATGCGC
GAGCTGTTCA CTACCGGCCG TTATGTCGAC TTTTCGGTCG AATCCATTGC TGCATTTGTC
CAAAGCAGTT GGGAGATGAA TAGCTTTTTG GTGCTAAACG CAGGCTATCG TTATCAACAC
ATGGAAAACA GCGTTGATGA TTTTATCGGT TATAACCAAC AGGTGGCGAT TGCCTCTGGC
AAGGCCAAGG GAGCCGATGC AATTAAAGGC GGCAGCACCG ACTATAACAT AGGTTTAGTC
AACCTCGGCT TGGTGGCCAA GTTGAGCCAA GACCAACAAC TCTGGCTTGC CTATTCCCAA
GGCTTTGAAC TGCCAGACCT GTCGAAATAC TATGGCCGCG GCACCTACAA GGCCGATGCC
GACGGTTACT TAAAGCTGCA AAACAGCATC AATATCAATG ATACCCGCCT TGATGGGATC
AAGACCGACT CCATGGAACT GGGATGGCGT TATCTTGCAG ACCGTTGGCA GGCGCAAGCC
AGCGTCTACT ATGCAGTGTC TGACAAGGTC ATTGAGGTTA ACAGCAAAGA TCTGACAATC
AATGTCAAAG ACCAAGATAA ACGCAGCTAT GGACTAGAGG CACAACTGAA CTTTGATATC
AGCTCCGACT GGCAAGTCGG CACCAACCTG CATCTGGTGC GCAGTGAAGT GAAGGATGAG
AATAATTGGG TCGATGAAAC CGTCACTTAT GCTTCGCCCT CTAAGGCCAC TGCCTTTATT
GGCTGGCGCG GCGACACACA GAAGATCCGT TTACAGGCTG AGCACAGTTT TAGCGCCGAA
TCTGACTATC GCTTCAAAAC CAACGATGGC CTAGCGAGTG AGCTTGATAG CTACACGACG
CTGGATTTAC TGGGCTCTAT CGATTTACCG GTCGGTACCT TGAGCTACGG CATCGAAAAC
CTGCTCGATA AAGACTACAG CACCCTGTGG GGCCAAAGAG CGGTGTACTT CTACAGTCCG
ACCTACGGTC CTGAGTCTAT GTTCGACTAC CATGGCCGCG GTCGTACCTT TGCGCTCAAT
TATCAACTGA GTTGGTGA
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| Protein sequence | MPKSIGPISL VTAAVICQLG LVNVATAAEN DMERMVVSAT RSPTQISDLS STVWIIDEAS
IREQTDSGKG IKEMLAALVP SMDVSSQGRT NFGQNIRGRA MVVLIDGVSM NTSRSISRQL
DSIDPFNIAR IEVLAGASAI YGGGALGGAI NIVTKKAADS SDTFEAEAGF KSGFNSSDDV
DYRTALAVTG GSDSLKGRFS TAWQENGQWF DGSSNPVILD ITQTGMQYTQ GYDLMANMDW
QLANDANLSA MAQYYRNGSD DEHGLYMGEN FSGVTGDASV LETRKGLDAD RSPATERTLL
NLSYSQNEFL GQTLYLQGFY RKENLDFHPF PYVNETSGVY NFSASAQNTN IYGLKAVVES
KPVDSLTLTW GLDWDKESFD SSQMSFDLDA ANQHGGLVMR ELFTTGRYVD FSVESIAAFV
QSSWEMNSFL VLNAGYRYQH MENSVDDFIG YNQQVAIASG KAKGADAIKG GSTDYNIGLV
NLGLVAKLSQ DQQLWLAYSQ GFELPDLSKY YGRGTYKADA DGYLKLQNSI NINDTRLDGI
KTDSMELGWR YLADRWQAQA SVYYAVSDKV IEVNSKDLTI NVKDQDKRSY GLEAQLNFDI
SSDWQVGTNL HLVRSEVKDE NNWVDETVTY ASPSKATAFI GWRGDTQKIR LQAEHSFSAE
SDYRFKTNDG LASELDSYTT LDLLGSIDLP VGTLSYGIEN LLDKDYSTLW GQRAVYFYSP
TYGPESMFDY HGRGRTFALN YQLSW
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