| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3714 |
|---|
| Symbol | |
|---|
| ID | 4254854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4419885 |
|---|
| End bp | 4420961 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638124402 |
|---|
| Product | alcohol dehydrogenase |
|---|
| Protein accession | YP_739751 |
|---|
| Protein GI | 114049201 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0557081 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGA TGACTATGCC AACGATGAAT GCCATCGTTA TGCAGGATGG TGAAGTCAGC
CTGCAACAGG TCGATTTACC CAAGCCACAG GCGGGCCAAG TGTTGGTGCG TAGCCTTGCT
TGTGGTATTT GTGGCTCGGA TATTCATATC ACGCGACACT ACAACGAAGT ATTTGATTTT
TATCGTCAGC TTGGGGTGAT GCCCGAAGGC GTCGATAATC ATGCCGCTGT GATGCTCGGC
CATGAGTTTT GTGCCGAAAT CGTCGAGTTT GGCCCACAAA CTCAGCAAGC CTTGGCGCTA
GGAACACGGG TGACCTCAGT TCCGATTCTC ATGAGCCAAA ATGGTGCTGG GGTGGGCGTT
ACCCCTGGCG TGAATGGTGC TTATTCTGAG TACTTTATTC TCGATGAGGC CTTATTAATG
CCTGTACCTG AGCATTTGCC ATCGGAGGCC GTGGCGCTCA CCGAACCATT AGCCGTAGGA
TTACATGCGG TGAATCGGGG TGATGTGCAG GCCGAAGATG TTGCGCTGGT GGTTGGTTGC
GGTCCCATTG GTCTTGCGGT GATCTCCGCG CTGCACTTGC GCGGCGTAGC TAAGATTGTG
GCTGCGGATT TACAGGGCGA TAAGTTGCAA TTAGCCCGAG AATTTGGTGC CACCCATACG
GTGAATCCTA GCGAGCAGGA TGAAGTCGCC TTCGCCGCCA AGCTTGCTGC GGGTCAGCGC
TTGGTGATTT TCGAATGTGT GGGTATCCAT AAGCTTATCG AAGGCTTTGT GCAGCGAGCT
CCCGCCAAAG CGACCATAGT GGTCACGGGC ATCCACACCG CAAACTCCAA TATTAATTAT
GCCTATGCCA CGGTCAAAGA ATTGGATATG TGCTTCTCCT ACTACTATCA GCCGGCGGAA
TTTGCGGCCT GTTTAGAGGA GCTGGCGCAG GGGACGATTC CTTGGCGTAA GCTGCTCACG
GGTAAGGTGG GGATGGATGG TGTATCGGGT GCGTTCAAGC AATTGATGAA ACCGAACCCA
CATATCAAAG TCGTTATCGA ACCTTGGCGT AATGGTGAAC TAGAGATGCT CGACTAA
|
|---|
| Protein sequence | MSLMTMPTMN AIVMQDGEVS LQQVDLPKPQ AGQVLVRSLA CGICGSDIHI TRHYNEVFDF
YRQLGVMPEG VDNHAAVMLG HEFCAEIVEF GPQTQQALAL GTRVTSVPIL MSQNGAGVGV
TPGVNGAYSE YFILDEALLM PVPEHLPSEA VALTEPLAVG LHAVNRGDVQ AEDVALVVGC
GPIGLAVISA LHLRGVAKIV AADLQGDKLQ LAREFGATHT VNPSEQDEVA FAAKLAAGQR
LVIFECVGIH KLIEGFVQRA PAKATIVVTG IHTANSNINY AYATVKELDM CFSYYYQPAE
FAACLEELAQ GTIPWRKLLT GKVGMDGVSG AFKQLMKPNP HIKVVIEPWR NGELEMLD
|
|---|
| |