| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3634 |
|---|
| Symbol | |
|---|
| ID | 4256132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4312961 |
|---|
| End bp | 4314205 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638124318 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_739671 |
|---|
| Protein GI | 114049121 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.239025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.49264 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATCACT TTCTCTACCA AGACAATACC CTGTACGCCG AAGGTTGTCG GGTCAATGAT
TTAGCCCAGC AGTATGGCAC GCCACTGTAT ATCTATTCCC GTGCGACGCT CGAACGTCAC
TGGCATGCGT TTAACAATGC GGTGGCCGAC CATCCACATT TAGTGTGTTA CGCGGTGAAA
GCCAACTCGA ACTTAGCCGT ACTAAACGTA TTGGCTCGTT TAGGCAGTGG TTTTGATATT
GTCTCGGGCG GAGAGTTAGC GCGGGTGATT GAAGCCGGTG GCGACCCGGC CAAAGTGGTA
TTTTCGGGCG TGGGTAAAAC CGTCGCCGAA ATGGAGCAAG CACTTAACCT CGGTATTTAT
TGCTTTAATG TCGAATCGAG CGCCGAGCTT GAGCAGTTAA ATCAGGTCGC AGGCCGCTTA
GGTAAAGTTG CTCCCGTGTC ACTGCGGGTG AATCCCGATG TCGATGCTGG TACGCATCCC
TATATTTCGA CGGGTCTTAA AGAGAACAAA TTTGGTATCG CCATGGATGA GGCCGAAGTC
GTATTCGCCC GTGCCCATGC GCTGCCACAT TTGCAGGTAA AAGGGGTCGA TTGCCATATC
GGTTCACAAC TGACAGAGAT CCAACCTTTC CTCGATGCGA TGGACAGAAT GTTAGCCCTT
ATCGACCGTT TGGCCGAGCA AGGCATTGTG ATTGAACACT TCGATGTGGG TGGTGGTCTA
GGGGTGACCT ATGACGATGA AACTCCGCCG CACCCTGATG TTTACGCCGC CGCACTGCTC
GCACGTTTAG GCGATCGCAA GCTCAAGTTA ATTTTCGAGC CGGGTCGTGC CATTGCCGCT
AACGCGGGCA TTTTCGTCAC TCAGGTGCTG TATCTTAAAG AAAACAGCGA CAAGCGTTTT
GCGATTGTCG ACGGCGCGAT GAACGACTTA ATTCGCCCCG CACTCTATAG CGCTTGGCAA
AATATCATTC CGGTAAATCC AAGGGATGAA CAGGCGCAAG TATTTGATAT CGTAGGGCCT
GTGTGCGAAA CCGGTGACTT TTTAGGTAAA GACAGAGCTC TCGCGATTGC GGCGGGGGAT
TTACTGGTTG TGCGCTCGAG CGGTGCCTAC GGTTTTGCCA TGGCCTCGAA CTATAACACT
CGTCCCCGTG CGGCCGAGGT GATGGTCGAT GGTGACAAGG CTTATCTGGT GCGTGAGCGA
GAAAAATTAG CGCAGCTCTG GCAAGGTGAG CAACTCCTGC CGTAA
|
|---|
| Protein sequence | MDHFLYQDNT LYAEGCRVND LAQQYGTPLY IYSRATLERH WHAFNNAVAD HPHLVCYAVK
ANSNLAVLNV LARLGSGFDI VSGGELARVI EAGGDPAKVV FSGVGKTVAE MEQALNLGIY
CFNVESSAEL EQLNQVAGRL GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIAMDEAEV
VFARAHALPH LQVKGVDCHI GSQLTEIQPF LDAMDRMLAL IDRLAEQGIV IEHFDVGGGL
GVTYDDETPP HPDVYAAALL ARLGDRKLKL IFEPGRAIAA NAGIFVTQVL YLKENSDKRF
AIVDGAMNDL IRPALYSAWQ NIIPVNPRDE QAQVFDIVGP VCETGDFLGK DRALAIAAGD
LLVVRSSGAY GFAMASNYNT RPRAAEVMVD GDKAYLVRER EKLAQLWQGE QLLP
|
|---|
| |