Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3596 |
Symbol | |
ID | 4255015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4269946 |
End bp | 4274346 |
Gene Length | 4401 bp |
Protein Length | 1466 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638124280 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_739633 |
Protein GI | 114049083 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.872186 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTTGGG CCGGTGGATT TGTGCAGCGT GTTTTCACCG ACAGAGATGG ACTAGCCGCC ACTAGTATCC GTGGCTTGAC CTTAGATGAC CATGGTTTCA TCTGGGCGGC GACGGAGCAG GGCTTATATC GGGTTAGCAA TTCTAAGGTC AGACGCATAG ACAAAACGGG TAACGAATCC CGCCTTGCGG ATGATTTCCT CAACTCAGTG GTCAATGTTG GGCAAGACAA ACTGCTGGTG AGCACCAACG CGGCGCTTTA CCTCTACGAT ATCCGCAACA ATCAATTTAC CCTGTTTGGC TCCCCCGATT TGTTTCCACA CTTTCCCGGT GGCGCCATGT TGTCTGTTGC GCAGATGGAT GCCCAGCGTT GGCTATTGCT CATTGATAAT GGCCAGATTT ATCAATATTC GCCTACGACT TCTGAACTCA CTCTGGTGAC TCAACTGGCG GTTAATCGCG ATCTGCCTTG GCGCAAGCTA TTGGTGCTAC CCAATGAGCA AATACTACTA GCGGGGCAAT TTGATTTATT GCTGCTGGAT AAGACAGGTA AAACCTTAAG CAAATATCCT TGGACTGAGT CTATGGGAAG CATTCTCGAT ATGCTTGAGG ATACAAAGCA TAGAGTTTGG TTGGCGACGA GCCGCGGCGT GTATCGGTTT GATCCCAGCT CGCAGCAACT TGAGGCTGTG GCAGAATTAC CCGATTGGAG CACAGTGATT GTTGAGGATC CTAAGGGGGC GTTGTGGTTT GCCAGCCGTT TTGGTCTGTT GAAATGGTCA CCTGAGACGC ACCAGATTGA GAGTTATCAA GAGGAACTAA AAAAGCAGGC CAATATGGAA ATCCTCAAGG CCATGCTGTT TGATGACTCA GGCTTAATGT GGGTGGGCGG CTCGGGTGAT GGTTTGGCAT TGTTGGCATC ACAGCCCGAT TTTATCTTAG AGACTTATAC GGCAGATAAA CCTTATGCGC TGAGCGATGC CATGATTTGG TCGATTCTAG CAGCACCAGA GGGGCTCTGG TTTGGCTCAT CCAATGTGAT GTTTATTGCC AAGGATACTC AGCAAGCTAT TGATATCCCG ATTGAAGGCT TGCTCTCCCA TGAGAGCATT TACGATATCA GAGCATTTTC TGAGCATTAT TTGCTGGTCT CTACCACTAG TGGCTTGTTT GTAGTCGATA GGACAGCCTT AAAGGGACAG AGCTTTGCAC AATGGATAAA TGGGCAGGAT GAATTTAAAA ACAAGCTGGT TTACCGCACC TATATCGATC CTTTGTTAAA GGGGCGAGTG TGGATTGCCA GTTCCAATGG GCTGTATTTC TGGGAGCTCG GCTTAAAAGC GCCACAAGCA TTTAATATCG ATAAGCTCTC TGAAGGGGAT GTTGAGCCGA AGCGCCCAGC GATTCGAACC TTGTATCGTG CCTCCGACGG TAAGCTGTGG ATTGGAGGTA AACGAGTTTT TGGCTATCTG GACGAGGCGA ATGAATTCCA TGATCAGCGC AGCCTATTTA ATGGCTTGAG TGCCATGCCC ACCATTAGCC ATATCGAAGA AATGTCTCCA GGGATCATGT GGTTTGGCTC CTACGAAAAG GGATTATTCG AGTATCACCT CAATAGCAGT GAACTGGTTT CTCTAACCGC GCTATGGCAA GTGAGTTGCA GCTCAGTGTT TTTTATCCAA AAGACGCCTA AAGCCAATCT GGTAGCCTGC GCCGATTCGC TTATCCGCCA AGATATCGCA ACTGGCCATA TCGAAATGTT TAATCAACTC GATGGGTTAA TTTCCGATGA AATGAATGAA GGTGCGTATT TTTATTCGCC TGAGTTGGGC TTGTATCTTG GCACACCGGA TGGCGTCATG CACCTCGATG TGGATAAGCT GACCAACCGG ATCACCGACG ATCATGTGAT GCTCGAGTCT GTGTCTGTCT ATTACGATAA CAGCACCGAA GTTTCCCTAT TACCCCAGCC CATGATGCAG ATTAAGCCCG ATGCCAGCAT GGTGAGTTTG CAGATCACAA ACCTTGATTA TCTCGATGAT TCGCCGATTC AATTTAAATA TCGGCTGCGT TATCAAGGAG AAGATGATAA CTACGTACTG CTCCAAGGCG AGTCACAGAT AAACCTCGCC GGACTCGCTG CGGGTGAGTA TGGGCTGGAA ATTTTAAGCC AAGTGAATGG GATATGGTCG GATAAACCCT TCGTTTATCC CTTCTATGTT GAGCAACATT GGTGGCTGAC TCAAGGCTTT AAGGGCATAT TACTGTTGGT GTTTTCGATA ATTGCCCTGA GTCTGGCCTG GTATCGTCAG CGCCAAGTTC GTACTTTTAT GGCGATGAAC CAAGCGCTGA CCGAGAGTGA TGATCGCTTG CGCCAGTCGT TGCGCGGTAG CGATTCCGAT CTCTGGGAAT GGCACCGAGA TACCCAGAGC TTTTACCTCG ATAACCGCGG TTCTGTGCTT GGCAGCCACG CCAATGAGAT AGTTGCGACC CTAGAGACGC TTCCAGTCCA CCCTGAGGAT AGGGGTAAAG CCTTAGCTCA GTGGAACAGT ATGCTGGCGG GGGAAATTGA CAGATTTGAG GCTGAATATC GTTACCAACG TCGCAGTGGT AATTGGGGCT GGTTAAGGGT GCGCGGGCGT CCTGTGGCTC GTAATAAACA AACCCAAGTT ATTGAGCGGG TAGCGGGTAT TTATAGTGAT ATTACCTTAC AGCGTCAGCT AGAGGATGAA ATCAATCTCC TCGCTCAAGC CTTTGAGAAT ACCTCCGAGG GGGTGTTGAT CTTAGACGTG GATGAAAACA TTCGGGTGGC GAACCATGCG GCGCAGCAAA TTATAGGTTC GGAGCAGCAT AATCTTGTTG GCCAATCATT TTCCCAATTT GTGCAAATGA AGGATGGCCT ATCGGCGGAA GTACATCAGT TACTCGGTCA AGACAGTTCG TGGACGGGGG AACGTGAGTT AGTGGGGCAG AATGGGGTGA TTTGCCCCGT ATGGCTTAAC GTCTCTGTGA TGCAATCTGC TAGCGATAGT TCACTGCATT ATGTCATTGT ATTTTCAGAT ATCACCGAGC GGAAACGTAC CGAGGCGGAC TTAAGACGAC TGGCTAATTA TGATGTGTTA ACTGGATTGC CGAACCGCTC TTTATTTTCT TCTAGGTTAT TACAGTCGAT ACAAATGGCG CAGCAAAGCG GTGAAAAGCT GGCGTTGTTA TTTTTGGACC TTGATCGATT TAAGCATGTT AACGACTCCT ACGGCCACAG TATGGGCGAT GCCTTGTTGG TTGAAGCTTC AAACCGCTTG CAGTCTTGTA TCGGCAGTGA GCATTTATTG TGTCGTTTTG GCGGCGATGA GTTTGTAATC CTGCTTAGAA ACGCTAACAA TCTCAATGAA ATTAACCATA TTGCCGAGCG ATTACTCGCG CAAATTGTCG CGCCATTCAA ATTGTTTGGT CGGGAGTTTT ACATTTCGAC CAGTATCGGC ATCAGTATTT GGCCCGATGA TGCGGTGCAG CCCGAAGCCT TTATTAAAAA TGCCGACCTG GCCATGTACC ACGCCAAGGA AGAAGGGCGC GGCAACTTTA AATATTATTC CTCGGAGCGC AATGCCCAAG CCTTATATCA TTTACGCTTG GAGGCGGATT TACGTAAGGC CATCGAGCGG GAAGAGTTTG AACTCTATTA CCAGCCGCAA ATTGATATCT TACGGGGCGA TAAATTTATT GGGATGGAAG CCTTAATTCG TTGGCGCCAT CCTAAGGAAG GTTACATCCG TCCCGATATT TTTATTAAGG TCGCCGAAGC TTGTGGATTA GTGGTTGAAA TCGACCGCTG GGTATTTCGT CGAGCCTGTT TAGACGGTGC TAAATGGGTA AAACGTTGTG CCACACAGTT TAAATTGTCG GTGAATATTT CGGCGGTACA TTTCCGCCAG CCAGATTTTA TTGATGGCAT AAAGAAAATT TTGGCCGATA CACAAATGCC GGCTTCATCC CTCGGGTTAG AAATCACCGA AGGGGTGTTG ATGAAGGAAG TGCAAGCGGC GAAAAGTCAC CTTACTCAGC TTAAAGAGTT GGGGATTGAA GTCGCCATCG ACGACTTTGG TACTGGCTAT TCTTCGTTGG CTTACTTACG TCATTTTGAT GTAAATACCT TAAAGATTGA TCGCTCCTTC TTAATTGATA TCGCCACCAA CTCTGCGGAT CAGGCTATTG TCAGTAGTAT TATTGAGTTG GCCCGCAACT TGAAATTAAC CGTGGTGGCC GAAGGGGTCG AAACCGTTGA GCAATTGGAG CAGGTCTTTA GCCGCGGTTG TTATATTGTG CAGGGCTATT ACTTTGCAAA ACCTATGTCG GTCACTGACT TTGAGCGGTA TTTATTGCAA AAAAGTACAC TGAGCTCTTA A
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Protein sequence | MVWAGGFVQR VFTDRDGLAA TSIRGLTLDD HGFIWAATEQ GLYRVSNSKV RRIDKTGNES RLADDFLNSV VNVGQDKLLV STNAALYLYD IRNNQFTLFG SPDLFPHFPG GAMLSVAQMD AQRWLLLIDN GQIYQYSPTT SELTLVTQLA VNRDLPWRKL LVLPNEQILL AGQFDLLLLD KTGKTLSKYP WTESMGSILD MLEDTKHRVW LATSRGVYRF DPSSQQLEAV AELPDWSTVI VEDPKGALWF ASRFGLLKWS PETHQIESYQ EELKKQANME ILKAMLFDDS GLMWVGGSGD GLALLASQPD FILETYTADK PYALSDAMIW SILAAPEGLW FGSSNVMFIA KDTQQAIDIP IEGLLSHESI YDIRAFSEHY LLVSTTSGLF VVDRTALKGQ SFAQWINGQD EFKNKLVYRT YIDPLLKGRV WIASSNGLYF WELGLKAPQA FNIDKLSEGD VEPKRPAIRT LYRASDGKLW IGGKRVFGYL DEANEFHDQR SLFNGLSAMP TISHIEEMSP GIMWFGSYEK GLFEYHLNSS ELVSLTALWQ VSCSSVFFIQ KTPKANLVAC ADSLIRQDIA TGHIEMFNQL DGLISDEMNE GAYFYSPELG LYLGTPDGVM HLDVDKLTNR ITDDHVMLES VSVYYDNSTE VSLLPQPMMQ IKPDASMVSL QITNLDYLDD SPIQFKYRLR YQGEDDNYVL LQGESQINLA GLAAGEYGLE ILSQVNGIWS DKPFVYPFYV EQHWWLTQGF KGILLLVFSI IALSLAWYRQ RQVRTFMAMN QALTESDDRL RQSLRGSDSD LWEWHRDTQS FYLDNRGSVL GSHANEIVAT LETLPVHPED RGKALAQWNS MLAGEIDRFE AEYRYQRRSG NWGWLRVRGR PVARNKQTQV IERVAGIYSD ITLQRQLEDE INLLAQAFEN TSEGVLILDV DENIRVANHA AQQIIGSEQH NLVGQSFSQF VQMKDGLSAE VHQLLGQDSS WTGERELVGQ NGVICPVWLN VSVMQSASDS SLHYVIVFSD ITERKRTEAD LRRLANYDVL TGLPNRSLFS SRLLQSIQMA QQSGEKLALL FLDLDRFKHV NDSYGHSMGD ALLVEASNRL QSCIGSEHLL CRFGGDEFVI LLRNANNLNE INHIAERLLA QIVAPFKLFG REFYISTSIG ISIWPDDAVQ PEAFIKNADL AMYHAKEEGR GNFKYYSSER NAQALYHLRL EADLRKAIER EEFELYYQPQ IDILRGDKFI GMEALIRWRH PKEGYIRPDI FIKVAEACGL VVEIDRWVFR RACLDGAKWV KRCATQFKLS VNISAVHFRQ PDFIDGIKKI LADTQMPASS LGLEITEGVL MKEVQAAKSH LTQLKELGIE VAIDDFGTGY SSLAYLRHFD VNTLKIDRSF LIDIATNSAD QAIVSSIIEL ARNLKLTVVA EGVETVEQLE QVFSRGCYIV QGYYFAKPMS VTDFERYLLQ KSTLSS
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