| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3590 |
|---|
| Symbol | hemE |
|---|
| ID | 4257975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4259298 |
|---|
| End bp | 4260362 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638124274 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_739627 |
|---|
| Protein GI | 114049077 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAC TAAAGAATGA TCGTTATTTA CGCGCCCTAC TAAAACAGCC TGTTGATATG
ACCCCAGTGT GGATGATGCG TCAAGCTGGC CGTTATCTTC CTGAATATAA AGCGACTCGC
GCTCAAGCGG GTGACTTCAT GTCTTTATGT AAAAACCATG AATTGGCTTG TGAAGTAACG
CTACAACCGC TGCGTCGTTA TGAGTTGGAT GCAGCAATTC TGTTTTCCGA TATTCTGACT
GTTCCCGATG CGATGGGTTT AGGTCTGTAT TTTGAGGCGG GTGAAGGCCC ACGTTTTGAG
CGCCCAACAG ACACTATCGA TGCCATCAAA AAATTAGCCG TTCCCGATCC AGAAGATGAT
CTGGGTTATG TGATGAAAGC GGTTAGCACT ATTCGCCGTG AACTGAATGG TCAAGTGCCA
TTGATCGGTT TCTCTGGTTC TCCTTGGACA CTCGCGACTT ACATGGTTGA AGGTGGCTCG
AGCAAAACCT TCGAAAAAAT TAAGAAGATG GCCTACGCAG AGCCAGCGGC GCTGCATATG
TTACTCGACA AGTTAGCGGA TTCAGTGACC TTATACCTGA ATGCACAAGT TGCTAACGGT
GCTCAATCGC TGATGATCTT CGACTCATGG GGCGGCGCCT TATCGCACAC GGCTTACCGT
GAATTCTCAC TGCGTTATAT GCAGAAGATT GTCGATGGCC TGACTCGTTT CGCCGATGGC
CGCCAAGTAC CAGTGACCTT ATTCACTAAG GGCGGTGGCT TATGGTTAGA AGCCATGGCT
GAAACTGGCT GTGACGCTTT AGGTTTAGAC TGGACTGTCG ATATTGCCGA TGCCCGTCGC
CGTGTCGGCC ACAAAGTCGC GCTCCAAGGT AATATGGATC CTTCTATGCT GTACGCGCCA
ATTCCACGTA TCGAAGAAGA AGTGGCTCAA ATTCTGGCGG GCTACGGTGA AGGTACAGGC
CATGTGTTTA ACTTAGGCCA TGGTATTCAC CAGCACGTTG ACCCAGAGCA TGCGGGCGCC
TTTATCAAGG CGGTTCATGC TCAATCTAAG CAGTATCATA AGTAA
|
|---|
| Protein sequence | MAELKNDRYL RALLKQPVDM TPVWMMRQAG RYLPEYKATR AQAGDFMSLC KNHELACEVT
LQPLRRYELD AAILFSDILT VPDAMGLGLY FEAGEGPRFE RPTDTIDAIK KLAVPDPEDD
LGYVMKAVST IRRELNGQVP LIGFSGSPWT LATYMVEGGS SKTFEKIKKM AYAEPAALHM
LLDKLADSVT LYLNAQVANG AQSLMIFDSW GGALSHTAYR EFSLRYMQKI VDGLTRFADG
RQVPVTLFTK GGGLWLEAMA ETGCDALGLD WTVDIADARR RVGHKVALQG NMDPSMLYAP
IPRIEEEVAQ ILAGYGEGTG HVFNLGHGIH QHVDPEHAGA FIKAVHAQSK QYHK
|
|---|
| |