Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3408 |
Symbol | |
ID | 4254674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4039660 |
End bp | 4041666 |
Gene Length | 2007 bp |
Protein Length | 668 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638124089 |
Product | TonB-dependent copper receptor |
Protein accession | YP_739446 |
Protein GI | 114048896 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.233269 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGTATC AACCTATCAA ATTAGCCGTT ATTTTAGCGG GAGTGCTCGG CACCGCTATA CCTCAATTAA GCTGGTCTTC TGAGGCGAGC GATTGTGGTG AAGATAAAAA ATGTCAGGAT TATCTAAGAG TATCTGGCGA TGTAATGCGC CAGCCTGTCC ATCTAGTGAG CGATCCTAAA CAGAACCGTT TGCCATTGCC TGCCTATGAT GGCTCGGGAT TTTTACGTTC GATCCCCGGA TTTAATATCA CTCGCAAAGG CGGCTCTGGT GGCGATCCTA TGTTTCGGGG GCTGGGCGGC TCGCGTTTAA ACATAGTCGA TGATGGTCAG CATGTGTATG GCGCCTGTGG TGGACGTATG GACCCACCGA CAAACTATAT TTATCCCGAA AGCTACGATC AGATAACGGT AATTAAAGGG CCACAGACGG TGAAATACGG CCCCGTTGGC ACTGCGGGCA CAATTCTATT TGAGAAAAAC CGCCATCGCT TTAACCAAGC GGATCTTGAA GGCCGAGCCA GCGCTACGGG CGGGAGTTTC GATAGACGAG ATGCCATGGT GGAGCTGAGC GCTGGGGATA AGAATTACTA CCTTGATTTA GATATGAATC AATCCAGTAG TGACCATTAT GAAGACGGAA ATGGCAACAA AGTACAGTCG AGTTACGATC GCCAAAACGC GAATCTCGCC TTGGGGTGGA CACCGACAGA GCGCACTGTA CTTGAGTTGG CCTACGGTGA GTCGAGCGGC GAAGCCGAGT ATGCCGACAG GTTAAACAAG GCGCGTCAAA TCGATAACCG TGATGCGGCG CTACTGCTAC AACACGAGTT TGAATCGAGC TGGTTAACGG CGGTCGAACT GCAAGCCTTT AGCAATAAAA ACGACCACAT TATGGATAGG TTCGATGAAG GTGTTAATTC AGGCGCCAAT GTGCGGCGGA TGACAGAGGG CGGCCATTTG TGGTTCGAGT TAGCGCCACT CGATGCCCTC GAATTAACAC TGGGGCTGGA TTATATGTCG AGCAAACATG ATGGTCGCAG CATGGCGCCC GGCGATGTTG GTTTAGACGA CTTGCTCAAT AAACCCTTTA AAGAGGATAT GCGCTATCAA AACTATGGGC TGTTTGCCGA GTCGCGCTAT CGTTTTGAAG AGAGCGACCT AGGCAGCAGT AGCTTGCACG CAGGATTGAG GCTCGACGAC TGGAATAGCG AGCTCTTGAT TGCTCAGCAG GGGGAGCGGG ACGATACCCT CTACAGTGGA TACCTGCGTT ATGAGTTTCA AACCGCGCAG CATCAATATT ATGCAGGCTT TGGCTCGGCG CAGCGGATGC CAGATTACTG GGAGATTATG AAGGCTAGCG CCGATAACCC CGCACAAAAA GCCTTTGACC TTAAAGCGGA AACCACCAAT CAGTTCGATA TAGGTTGGAT TTATCAGGGG CCTGTCGAGG CTTCGGTGTC ACTCTTCTAT GGTGAGATTG CGGACTATAT TCTGATTGAT TCCAGCGGCC AAGCCACCCT TGCCCGTAAT ATTGATGCGA GTCTCTACGG TGGTGAGGCC AGCCTAGATT ATGCGCTGAA TGAGCAATGG TCGAGCCAAC TCACGGTGAG TTATACCCAT GGTGAAAACG ATACCGACAA GGTGGCGCTT GGGCAAATAT CGCCGTTAGA GGCCAGATTA ACCGTTAACT ACCAATGGCA AAGTTGGACC ATGGCGGCGC AGTGGCGAGT GGTGGCCGCG CAAGACCGTT ACACCTTAGG TCATGGCAAT ATTGTGGGGC AAGACTTAGG CCCGAGCAGC GGTTTTGGTA CTTTGGCGCT CAATGCTTCT TGGTCGTATA ACAAGGATTT ATCCTTAATT TTGGGTGTCG AAAACCTGTT TGATACCGCC TATGCCGAGC ATGTGAGTAA GGCGGGTACG GGGAACGATC TGCCGGGCAG TGAGGCCATG TTTAGGGTCA ACGAGCCGGG TCGTAATCTG TGGGCTAAGC TGACCTATCA GTTCTAA
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Protein sequence | MLYQPIKLAV ILAGVLGTAI PQLSWSSEAS DCGEDKKCQD YLRVSGDVMR QPVHLVSDPK QNRLPLPAYD GSGFLRSIPG FNITRKGGSG GDPMFRGLGG SRLNIVDDGQ HVYGACGGRM DPPTNYIYPE SYDQITVIKG PQTVKYGPVG TAGTILFEKN RHRFNQADLE GRASATGGSF DRRDAMVELS AGDKNYYLDL DMNQSSSDHY EDGNGNKVQS SYDRQNANLA LGWTPTERTV LELAYGESSG EAEYADRLNK ARQIDNRDAA LLLQHEFESS WLTAVELQAF SNKNDHIMDR FDEGVNSGAN VRRMTEGGHL WFELAPLDAL ELTLGLDYMS SKHDGRSMAP GDVGLDDLLN KPFKEDMRYQ NYGLFAESRY RFEESDLGSS SLHAGLRLDD WNSELLIAQQ GERDDTLYSG YLRYEFQTAQ HQYYAGFGSA QRMPDYWEIM KASADNPAQK AFDLKAETTN QFDIGWIYQG PVEASVSLFY GEIADYILID SSGQATLARN IDASLYGGEA SLDYALNEQW SSQLTVSYTH GENDTDKVAL GQISPLEARL TVNYQWQSWT MAAQWRVVAA QDRYTLGHGN IVGQDLGPSS GFGTLALNAS WSYNKDLSLI LGVENLFDTA YAEHVSKAGT GNDLPGSEAM FRVNEPGRNL WAKLTYQF
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