Gene Shewmr7_3129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3129 
Symbol 
ID4255104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3707501 
End bp3708160 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content52% 
IMG OID638123813 
Producturacil-DNA glycosylase 
Protein accessionYP_739170 
Protein GI114048620 
COG category[L] Replication, recombination and repair 
COG ID[COG0692] Uracil DNA glycosylase 
TIGRFAM ID[TIGR00628] uracil-DNA glycosylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000726683 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCGACTT GGCAGGCATT TATTGACCAT CAACGTTCTC AACCCTATTA CCAGCAGTTG 
ATAGCATTTG TGAATCAAGA GCGTGAATTG GGTAAGGTGA TCTATCCTCC TAAAGAGGAT
GTGTATAACG CCTTTAAAAC AACCCCATTG GAGCAAGTGC GTGTAGTGCT TATAGGTCAA
GATCCCTACC ATGGCCCCGA CCAAGCCCAC GGCCTGTGTT TCTCGGTTAA GCGAGGCATT
AAACCGCCGC CATCGCTGGC CAATATGTAC AAAGAGTTAG TGAACGATAT TCCCGGTTTC
CAAATCCCTA ACCATGGTGA TTTAACCCAG TGGGCGGAGC AGGGGATCTT GATGCTCAAT
ACCGTGCTGA CGGTGGAGCA AGGGCAAGCC CACTCCCATG CTAATGCAGG CTGGGAAACC
TTTACCACTG AGGCGTTAAA GCTGCTTAAT GCGCAGGAGC GGCCGATTAT TTTCGTACTC
TGGGGCAGCC ATGCCATCAA AAAAGGGGCG GTGATTACTG CGCCGCAGCA TCACATTCTG
TCGGGCCCCC ACCCGTCACC GCTGTCGGCC TATCGCGGCT TCTTCGGTTG TGGGCATTTT
TCTAAAGTGA ATCAACTGCT AATGGCGCGG GGTGAGGCAC CGATCCAATG GCAGGTTTAA
 
Protein sequence
MATWQAFIDH QRSQPYYQQL IAFVNQEREL GKVIYPPKED VYNAFKTTPL EQVRVVLIGQ 
DPYHGPDQAH GLCFSVKRGI KPPPSLANMY KELVNDIPGF QIPNHGDLTQ WAEQGILMLN
TVLTVEQGQA HSHANAGWET FTTEALKLLN AQERPIIFVL WGSHAIKKGA VITAPQHHIL
SGPHPSPLSA YRGFFGCGHF SKVNQLLMAR GEAPIQWQV