Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2973 |
Symbol | |
ID | 4255650 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3521105 |
End bp | 3522829 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638123650 |
Product | Cl- channel, voltage-gated family protein |
Protein accession | YP_739014 |
Protein GI | 114048464 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0038] Chloride channel protein EriC |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000658505 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGCAATTAA CGATAAATAA AGCCGCGATT CAAGACGCCA TCAGCACAGC TAAAAAGTAC TTAACTAACG AGCTGCGTGA TCATTTATCC CAAGCCAAGA TCAGTGCGCA GTTGTGCTTA CTGGCCTTGC TATTCGCCAT CTTCGCCTCC TGCGTGATCC TGTTGTTTCG ACTCTTACTC CTGTGGGCGA ACCATTACAC CCAAATCGAG ACGCTGGATT TTACGGGTAA CATCGCCGAC TGGCGAGCAC TGTTGCCACT TTTTGGCGCC TTGTTGATCT GGATTGTGGC CAAACTCGGC TCCAAACGTT ACAAACGCAT GGGAATTGCC TATGTATTAC ATAGGGTTAA ATTGCACTAT GGCAAAATCC CGTTGCAATC TGCCGCGGGG CAATTTTTTC AGGCGCTGTT TGCCTTAGGG ACTAATTTCT CGGTGGGCCG TGAAGGCCCT GCCATTCACC TTGGCGCCGT AAGTGCCAGC GTGTTGGCCG AAAAATTTAA TCTTCCCGAC AATAGCGTGC GAATTATGTG CGCCAGCGGG ATTGCCGCAG GAATTGCCGC TACCTTTAAC GCCCCGCTTG CGGCGGTGAT TTTTGTACTC GAAGTGATCG TGCGCGAGTA CAAGGTGCAT TACTTCTTCC CGATTATGCT GTCCGCGATT TGTGGTGCAG TTTCCAGCCA GCTGGTTTTT GGTAATGTGC ACGAGTTTGA CCGCATTCAG GTGATCCATA TTCCATTAGA TCACTATCCG ATTTTAGCCT TGGGTGGCAT TGCACTGGGC TGCGCGGCCG CCTTCTTCAA CTACGCGCTC CTTAAAGTCA CTGCCACTGG GCAAAACTGG CCACTGATTT ATCGGCTCTT GCTGGCGGGC AGTATCACTA CGCTGATTGG CTTAATCTTG CCCCAAGCCC TCGGCACTGG GGATTTAGCC ATCAGCGAAG CCATTAGCGA GCACCCTAGT TTATTGCTAC TCATCGCCCT GCTTGCGGCA AAGATTATCG CCACGATTGC GGCAATCGGA CTTGGGATCC CAGGCGGTTT GATTGGTCCA CTCTATGGTA TCGGCGCCTT AATAGGTGCC ATCTTAGCCT TAGTTAGCGC CATTCTATTC CCTTCGATTG CGCCTTACGT TGGCCTCTAT ACGGTTATCG GCATGACAGC GATGATGGGC GTTTGCCTCA GTGCGCCGCT CGCCGCCTTA GTGGCGCTGC TTGAGATGAC CAACGATGCC AGTATCATTC TGCCAGCAAT GTTTGTAACC ATTCCCGCCT TCTTGATTGC CTATCAAGGG TTTAAAACCA ACTCCATCTT CTTCAAGCAG TTAGAAATTA TGGGTTTAGG CTATAAAGTC GCCCCAGTGA ATTTGGCGCT ACAGAAAAAA GGCGTGCGCG CCCTGATGGA TAAACGCTTC GTTATAGTCA ACAACAACGA CGAGCTGCTG CTCGAAGTGT TAAAACGCGC CGAAGGTCGT CCAGTGTTAG TGCGTAACGC CGATGGGGTG ATCGAAATGC TCAGCCTCGA GATGCAATCC TACGATGACA ACATCACCCT CTCGCGCCAT CCAATGCAGG GGCTGAGTGA CACTAAAACC CTCGATGAGG TGTATAACTT GTTGTCGCCC AAACGCAGCG GTGAGGTGTT TATCTATCAA GACACGCCTG ACAATGTAGT GGGCGTAGTG AGTTGGTCGA ACCTACAGCA GGAAATTCGC TCGGGCCAAG TCTAA
|
Protein sequence | MQLTINKAAI QDAISTAKKY LTNELRDHLS QAKISAQLCL LALLFAIFAS CVILLFRLLL LWANHYTQIE TLDFTGNIAD WRALLPLFGA LLIWIVAKLG SKRYKRMGIA YVLHRVKLHY GKIPLQSAAG QFFQALFALG TNFSVGREGP AIHLGAVSAS VLAEKFNLPD NSVRIMCASG IAAGIAATFN APLAAVIFVL EVIVREYKVH YFFPIMLSAI CGAVSSQLVF GNVHEFDRIQ VIHIPLDHYP ILALGGIALG CAAAFFNYAL LKVTATGQNW PLIYRLLLAG SITTLIGLIL PQALGTGDLA ISEAISEHPS LLLLIALLAA KIIATIAAIG LGIPGGLIGP LYGIGALIGA ILALVSAILF PSIAPYVGLY TVIGMTAMMG VCLSAPLAAL VALLEMTNDA SIILPAMFVT IPAFLIAYQG FKTNSIFFKQ LEIMGLGYKV APVNLALQKK GVRALMDKRF VIVNNNDELL LEVLKRAEGR PVLVRNADGV IEMLSLEMQS YDDNITLSRH PMQGLSDTKT LDEVYNLLSP KRSGEVFIYQ DTPDNVVGVV SWSNLQQEIR SGQV
|
| |