| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2647 |
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| Symbol | |
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| ID | 4257179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 3126631 |
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| End bp | 3129858 |
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| Gene Length | 3228 bp |
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| Protein Length | 1075 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638123325 |
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| Product | lysine decarboxylase transcriptional regulator, CadC |
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| Protein accession | YP_738689 |
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| Protein GI | 114048139 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.15837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACA GCACATTTTT TTTGGGTGAA TGGCAAGTCA ATCCCAGCGC CAACAGCCTG
CTTCTGGGTA AACAAGTTAA ACAGCTTGAG CCTAAGGCGA TGGATGTGTT GTTATTTCTC
TGCCAAAACG CCGGTGAAGT GGTCAGCAGC GACGAGATTG TCAGCCATTG CTGGCCGGGA
GTCGACACAG GCGATAATCC ACTGCACAAA ATTATCAACC AGTTACGTCG CGCACTTGGC
GATAGCGCCA CCGAATCCCG TTACATTGAG ACCATTCGCA AACGCGGTTA TCGCACCTTA
GCCGAAGTGC GTTTTCCCGT CGGCCACGAG GCCAGCGCCA CGCCACAGAC CTGGCAAGGT
GGCTCGCCAT TTCCGGGCCT GCAAGCCTAC AGTGCCAACT ATGCCGACGT GTTCTTCGGT
CGCAGCGAAC AAATTAGCAC GCTGCTGAAT CGCATTAGCC AACAAATCCA ATTTGGCCGC
GCCTTCTGCT TAATTTTAGG CCCCAGTGGT AGCGGTAAAT CCTCCTTAAT TAATGCCGGT
GTATTGCCTA ACCTCATGGC CGCCAATGGC TTTAATGGCG TCGGCGTTGT GGCCTATAGC
AGCCTCGATT TTGCCGATGT CAGCAAGGGA CAACTGCTCA CCGATTTGGC CAGCGCCATG
CTCGACTGGG AACTAAACGA CACCCCAGTC TTTGAGGGAA TGAGCGCCGA TACGCTTGCC
GCCAAACTTG AGCAAGATCC GCAGAGCATT GTCGATATAT GTAAACAAAG TCTTAAAAAT
CAGACCTATG CTACGCCACG CTTTGCCTTA TTTATCGACC GATTAGAAGT CTTATTATCA
TCGCCGCTGT TTAGCGACGC CGAGCGCAGC ACCTTTATCG AGCTGTTAGA GCGTCTTGCC
ACTTCCCATG CGGTGTTAAT TTTAAGTGCC TGTCGCAACG ACTTTTATCC GTTGCTCGTC
AATTACCCCA GCCTGATGGC AGGCAAAGCG CGCGGCGCCC ATTTCGACTT AGCGCCGCCC
ACTCGCACCG AGCTGTTGCA GATGATCCGC CTGCCAGCCG TTGCCGCCAA TTTAACTTGG
GAAATCGATA GCGACACCGC CATGCCGCTC GATGAAATGC TCTGTAGCGA TGCCGCCAGC
AACCCTGATG CGCTGCCTAT GTTGCAATAC ACCTTGCAGG CACTGTATTT ACAGCGCAGC
GACGATGACA AACTATTAGT CTCTGTGTAT CGCACCTTGG GCGGTATCGA AGGCGCTATC
GGTAAAAATG CCGAGCAGGC CATCTCCCAT TTAACCGAGG CCGAAAAAGC CAGTCTGCCG
CGGATTTTGT CCCTGTTAGT CACCCTGCGT GAGGATGAAA AATCCATCAC CAGCCGCACC
GCCCGCTGGT CACAGCTGCA AAGCGCGGCC GAAACCGCCC TAGTGCAAGC CATGGTCGAT
AGCCGCTTAT TTGTGTCCCA TCTGCAAAAT GGTGAACCCT GTTTTAGCAT CGCCCACGAA
GCCCTGCTGC GCCGCTGGCC AAGGGCGACG GCGTGGATCA GCGAACATAA CGACAGCCTT
AGCATTAAGA GCCGACTACA GCATTTATCC CAGCGCTGGC TCAGCGAAGC CAAACACAGC
GCCTATTTGC TGGCCGAGGG GAAACCCTTA AAAGAAGCCC AAAGCCTTAG GCAAAACCCC
TTGTTTGACT TAGACGAGCG GGAAACCGAC TTTATTGCCG CCTCCAGCAA ACGCGCCACT
ATGCTGCGCT GGACGAGGCG CATCACAGTC GCCCTGCTGT GCGTACTCAC CTTAACCTCG
GTCATTATGA GCGTTCGCAG TATCGAAGCC GAAAAGCTTG CCCAGCAAAA ACGCCTCGCC
GCCGAAGATC TGCTCGGGTT TATGGTGGGT GACTTCGCCG ATAAGATGCG CGGCATCGGC
CGGATGGACT TACTCGACGG GATCAGTAAT AAGGCCTTGG AATATTTCAC GGATTTCTCT
AGCCAAGACG ATGAGAAGTA CTTAAGCTTC GATGCCCGTT TCCAGCATGG GCAGACCTTA
GAGGCCATGG GCGAAGTCGC CTATTCACGC AATAAAATCG ATGAAGCCCG CAGCGCCCTG
CTCGCCGCAC AGGAAAAAAT GCTGCCGCTA CTCGAATTGC AGCCAGACAA CTTAGCCCTG
CTAAAAACCT TGGGCGCCAA TGCCTTTTGG TTGGGTCAGC TTAAATATGA TGTGAGTGAT
TGGGCCGCAT CACGCCCGTT CTTCGAGCAG TACTTAGCCT ATAGCCAAAC CATGTATGCC
CTAGCGCCAG AGGATAAAGA TGCGCTGATG GAGCTGTCCT ATGCCCATAA CACTTTAGGC
TCAGTGTCGA TGAAGCAACA GGACTTTACT AAAGCACAGC AAGATTTTGA GGAGTCATTA
CGATTAAAGC TATTGGCACT GGCCAAAGCC CCCGAAGATA GCCAACTGAT TGCTGATGTG
GCCGATACTC GCTCTTGGTT AGCAAGTGCA GCACTCTCGC AAGGGGATTT GCTATCGGCG
ATAAATATCC ATATTCAACT TCAACAAGAG TTAGGCAAAA ATATTAAACA GCCATATATA
TTAGATAGGC TGTCAGCGAG CCATCAAATT CTAAGTGAGT TATATGATTA TCAAAACCAA
ATCGATTTAT CTCTACGTCA AGCTCAACTT GGATTAGAAG CGATTACAAG AGCATTAGAG
CAGGACCCTG GGAATGATAT ATGGATCAGA CAAAAATACA CTTTGCAATT TAATCTACTT
GCACTCTCAA ATGCTGTTTC AAGTGATGTT TCTAACTTAA AGAATTTACT TGATTCTGAT
GTCAAATTAA ATTCATCAAC AAAAAAAGAT GAGATTTATG CAAGTTATTT CCTGGCATCA
GCAAAACACT TGCAACGACA AGGACTGACT ACTGAAAGCA GATATTATGC ATCTGAGGCA
AAAAATAAAT TTCAGAAAAT ATCAGAAAAG TTCAACCAAA GCACAAACTT CACATCAAGT
TTAGCTGAAA GCATATTATT AGAAGCAAAA ACTGTTCAAG ATGAAAAAAC AAAGATTGAG
TTATGTAATA CTACGAAAAG TTTAATTTCT CCAATACTAA AAAAGGACAA ATCACCAAAC
TTCACTGTTA CTTATATAAA ATCACTTGAC TGCCTTGGTG AAGTTGTCAA TGATGAAGAC
TTAAAAAAAT TATTATTAGA ATCTCACATA ACTAATACAG CATTTTAA
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| Protein sequence | MSDSTFFLGE WQVNPSANSL LLGKQVKQLE PKAMDVLLFL CQNAGEVVSS DEIVSHCWPG
VDTGDNPLHK IINQLRRALG DSATESRYIE TIRKRGYRTL AEVRFPVGHE ASATPQTWQG
GSPFPGLQAY SANYADVFFG RSEQISTLLN RISQQIQFGR AFCLILGPSG SGKSSLINAG
VLPNLMAANG FNGVGVVAYS SLDFADVSKG QLLTDLASAM LDWELNDTPV FEGMSADTLA
AKLEQDPQSI VDICKQSLKN QTYATPRFAL FIDRLEVLLS SPLFSDAERS TFIELLERLA
TSHAVLILSA CRNDFYPLLV NYPSLMAGKA RGAHFDLAPP TRTELLQMIR LPAVAANLTW
EIDSDTAMPL DEMLCSDAAS NPDALPMLQY TLQALYLQRS DDDKLLVSVY RTLGGIEGAI
GKNAEQAISH LTEAEKASLP RILSLLVTLR EDEKSITSRT ARWSQLQSAA ETALVQAMVD
SRLFVSHLQN GEPCFSIAHE ALLRRWPRAT AWISEHNDSL SIKSRLQHLS QRWLSEAKHS
AYLLAEGKPL KEAQSLRQNP LFDLDERETD FIAASSKRAT MLRWTRRITV ALLCVLTLTS
VIMSVRSIEA EKLAQQKRLA AEDLLGFMVG DFADKMRGIG RMDLLDGISN KALEYFTDFS
SQDDEKYLSF DARFQHGQTL EAMGEVAYSR NKIDEARSAL LAAQEKMLPL LELQPDNLAL
LKTLGANAFW LGQLKYDVSD WAASRPFFEQ YLAYSQTMYA LAPEDKDALM ELSYAHNTLG
SVSMKQQDFT KAQQDFEESL RLKLLALAKA PEDSQLIADV ADTRSWLASA ALSQGDLLSA
INIHIQLQQE LGKNIKQPYI LDRLSASHQI LSELYDYQNQ IDLSLRQAQL GLEAITRALE
QDPGNDIWIR QKYTLQFNLL ALSNAVSSDV SNLKNLLDSD VKLNSSTKKD EIYASYFLAS
AKHLQRQGLT TESRYYASEA KNKFQKISEK FNQSTNFTSS LAESILLEAK TVQDEKTKIE
LCNTTKSLIS PILKKDKSPN FTVTYIKSLD CLGEVVNDED LKKLLLESHI TNTAF
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