| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2619 |
|---|
| Symbol | |
|---|
| ID | 4255226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 3095406 |
|---|
| End bp | 3097382 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638123297 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_738661 |
|---|
| Protein GI | 114048111 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000908403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATTA AGTCGAGTAT AAATCCACCG GTTTTTTATT CGTCGGTCTT TTTTATCACA
TTAATGGTGA TGATATGCGC CATTTGGCCG ACAGAGGCCA ATCACTTTTT TAAATCCATG
CAGTCGTGGT TAGAAGCAAA GGCGGGTTGG TTATATATCC TTGGCGTGGC GATTTTTCTG
ATTTTTATCA TCTTTGTCAT GGTCAGCCGC TTTGGTGATA TTAAGCTCGG CCCCGACCAT
GCTGTGCCCG ATTATAGCTA TAAGAGCTGG ATTGCTATGC TGTTTTCGGC GGGGATGGGA
ATTGGATTGA TGTTCTTCGG CGTCGCCGAA CCCGTAATGC ATTACTTAGC GCCGCCCGAT
GCAACGCCTG AGACCTTGGC CGCCGCCAAA GAAGCCATGA AGATTACCTT CTTCCATTGG
GGCATACATG CGTGGGCGAT TTACGGGGTG GTTGCCCTGA GCTTGGCCTA TTTTGCCTAT
CGGCATAAGT TGCCCTTGTT ACCCCGCAGC GCACTCTATC CCTTAATCGG TGAGCGCATC
CACGGCCCGA TTGGCCACTG CGTCGATACC TTTGCGGTAT TGGGGACTAT GTTCGGGGTG
GCGACCTCCC TAGGGTTTGG GGTGTTGCAG GTTAACTCGG GCCTAAGCTA TTTATTCGAG
CAACTGCCCA ACAACAGCAC AGTGCAAGTA TCGCTGATTA TTGGCATTAC CTTACTCGCG
ACTCTGTCGG TATTTTCGGG CCTAGATAAA GGGGTAAAAC GCTTAAGTGA GCTTAACTTA
GGTTTAGCTC TTATTTTGCT GCTTATCGTG TTGCTCCTTG GGCCAACGGT GATGTTGCTG
CAAGCCTTCG TACAAAATAC CGGTAGTTAT CTGAGTGATA TTGTTAATAA AACATTTAAT
CTGTACGCCT ATCAGCATAA GGAAGACTGG CTGGGCGGTT GGACGTTACT CTACTGGGGC
TGGTGGATCT CCTGGTCACC TTTTGTCGGC ACCTTTATTG CGCGGGTGAG TCGTGGCCGC
ACCATTAGGG AGTTTTTAGT CGGCATTTTA TTTGTGCCCT CGGCGCTGAC CTTTTTGTGG
ATGACGGTAT TTGGTAACTC GGCCATCGAC GCCATTATGA ATCAAGGCGC GACCTACCTG
AGCGATGCAG TGAATACCAA TGTGCCCGTG GCCTTGTTTG TGTTTTTTGA ACATATGCCG
TTCCCGCATC TCCTGTCGGG GATTGGGATT TGTTTAGTGG TCACCTTTTT TGTTACCTCA
TCGGATTCTG GATCGCTTGT AATAGACAAC CTGACCTCGG GGGGCGATAA CAATGCGCCT
GTCTGGCAAC GGGTGTTTTG GGCATTATTG CAAGGGGTAG TGGCCTCGGT GCTGCTGCTT
GCCGGCGGCT TACAAGCCTT ACAAACCGCG GCCATTGCCA GTGCCATGCC ATTTTTATGC
GTGATGCTGC TGATGTGTTT GGGGCTGTAT AAGGCGCTGA AAGACGATTG GCTTAAGATC
AACAGTGTGC AGATGCATAC CACCAGTGTG CAATACGCTA AGACCAATAT CAGTTGGGAG
GAACGCATCG AGGTGTTAGT GTCGCATCCT ACCGAAGATG AGGCGCGTAT CTTCCTCAAT
AATGTCGCGA CACCGGCGTT ATCTAAGGTG TGTCAGCAAT TTATGACCAA GGGCCTGACG
GCGGATCTCG AGTATCTCGG CGGCAAAGTG CGATTGGTGA TTAGCAACGA AGCCTATCAA
CCCTTCGTTT ACGGTGTGCG GATGCGCTGC TTTGAAATCG TCAATCCGGT CGGTGAAGAG
TTAGAGCAGG GCAACAATTG GTACTATCGC GCCGAAGTGT ACTTAGAGCA GGGCGGCCAA
CACTATGATG TGATGGGCTA TACCGAAGAG CAGCTATTGG CTGACGTGGT TACCCAGTAC
GAGAAATACC TGCACTATTT GCACTTGTCC AATGCCGACC AAGGACATGT AACCTAA
|
|---|
| Protein sequence | MSIKSSINPP VFYSSVFFIT LMVMICAIWP TEANHFFKSM QSWLEAKAGW LYILGVAIFL
IFIIFVMVSR FGDIKLGPDH AVPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD
ATPETLAAAK EAMKITFFHW GIHAWAIYGV VALSLAYFAY RHKLPLLPRS ALYPLIGERI
HGPIGHCVDT FAVLGTMFGV ATSLGFGVLQ VNSGLSYLFE QLPNNSTVQV SLIIGITLLA
TLSVFSGLDK GVKRLSELNL GLALILLLIV LLLGPTVMLL QAFVQNTGSY LSDIVNKTFN
LYAYQHKEDW LGGWTLLYWG WWISWSPFVG TFIARVSRGR TIREFLVGIL FVPSALTFLW
MTVFGNSAID AIMNQGATYL SDAVNTNVPV ALFVFFEHMP FPHLLSGIGI CLVVTFFVTS
SDSGSLVIDN LTSGGDNNAP VWQRVFWALL QGVVASVLLL AGGLQALQTA AIASAMPFLC
VMLLMCLGLY KALKDDWLKI NSVQMHTTSV QYAKTNISWE ERIEVLVSHP TEDEARIFLN
NVATPALSKV CQQFMTKGLT ADLEYLGGKV RLVISNEAYQ PFVYGVRMRC FEIVNPVGEE
LEQGNNWYYR AEVYLEQGGQ HYDVMGYTEE QLLADVVTQY EKYLHYLHLS NADQGHVT
|
|---|
| |