| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2574 |
|---|
| Symbol | |
|---|
| ID | 4257527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3039566 |
|---|
| End bp | 3040531 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638123252 |
|---|
| Product | cytochrome C family protein |
|---|
| Protein accession | YP_738616 |
|---|
| Protein GI | 114048066 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.448859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00699839 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGG ATATTGGGTT AAAGTTCAAA AGCATAACTC AGGTTATGCT TGTTGTGATG
TTATCGATAC TCAGCCTTTC AACGTTAGCG ACACCTTGGG ATGACAAGCC ACCTGAGGAG
GTCGTCGCGA CTTTGGACAA AAAATTTGCC GAAGGTAAGT ACTCGGCCAA AGGGGCTGAC
ACTTGCCTGA TGTGCCATAA GAAAAGTGCC ACTGTGATGG CCATTTTTGA TGGTGTACAT
GGTAATCCTA ATGTCAAAGA TTCCCCCATG GCCGACTTAC AGTGTGAGGC TTGCCACGGC
CCGCTCGGTA ATCATAACAA GGGTGGCAAA GAGCCGATGA TCACCTTCGG CCAGAATTCC
CCCGTTCCCG CGCAAAAACA AAACAGTGTC TGCATGAGTT GCCATAACGA TGATCAACGC
ATCGCGTGGA AAGGCAATCA CCATGACAAT GCTGATATTC CCTGCAGTAG CTGCCACCAA
GTACACGTAG CAAAAGACCC TATCAGCGAC AAAGCCAACG AAGTGGCGAT TTGTACCCAA
TGCCATACCC AGCAAAAAGC GGATATGCAC AAACGCTCAT CCCATCCATT GCAATGGCAA
CAAATGGTCT GTAGCGATTG CCACAATCCC CATGGCAGTT TAAATGATGC CAGTCTGAAG
CAAATGAGCG TCAACGAAAA CTGTTACAGC TGCCACGCCG AAAAACGCGG TCCTAAATTG
TGGGAACATG CGCCAGTCAC CGATAATTGC GCGAACTGTC ATAACCCCCA CGGCAGCGTC
AACGAATCCA TGCTTATCAG CAAACCGCCA CAGTTATGCC AACAGTGCCA CGCCTCCGAT
GGCCACAGCA GTAATGCTTA CTTTGGTAAT CAAACCAATG CCTTCACCTC GGGTAATTCC
TGTATGAATT GCCATGGACA AGTGCATGGT TCAAACCATC CATCCGGCAA GTTGCTCCAG
AGATAA
|
|---|
| Protein sequence | MNMDIGLKFK SITQVMLVVM LSILSLSTLA TPWDDKPPEE VVATLDKKFA EGKYSAKGAD
TCLMCHKKSA TVMAIFDGVH GNPNVKDSPM ADLQCEACHG PLGNHNKGGK EPMITFGQNS
PVPAQKQNSV CMSCHNDDQR IAWKGNHHDN ADIPCSSCHQ VHVAKDPISD KANEVAICTQ
CHTQQKADMH KRSSHPLQWQ QMVCSDCHNP HGSLNDASLK QMSVNENCYS CHAEKRGPKL
WEHAPVTDNC ANCHNPHGSV NESMLISKPP QLCQQCHASD GHSSNAYFGN QTNAFTSGNS
CMNCHGQVHG SNHPSGKLLQ R
|
|---|
| |