Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2554 |
Symbol | |
ID | 4257453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3015074 |
End bp | 3015964 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638123229 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_738596 |
Protein GI | 114048046 |
COG category | [V] Defense mechanisms |
COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.162535 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0684002 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTCCAA TTAAAATTTA TCAGGAAGAT CAAATCGCCT CGCCCATGAT GCGGGTCTGG CAGAATTTTT CGGCAAACCC CTTTGCCTTA GCGGGTCTGT GGACCATTGC TTTTCTGCTG CTGCTCACCC TCTTTGGGCC CATGATTGCC CCTTTCTCCC CCGAGGCGCA GGATCCACGG GCCTTACTGT TACCGCCCTC TTGGGACCCT TCGGGCACAG TGGCGCACTT TTTGGGCACA GACGATCTGG GCCGAGACAT CTTTAGCCGC TTATTGCATG GTGCGCATTT AACCTTCGGC ATGGCGCTGA TGATTGTCGG TACCGCATTG TTTATGGGGT TCATCATCGG CTCGCTATCC GGCATGATGC GTGGCTTAAA ATCCAGTATT TTAGGTCACT TACTCGATGC ATTACTGTCA ATCCCTTCGC TGCTGATGGC GATTTTAGTG GTCGCCGTTA TGGGGCCAGG GCTCGATAAC GTCTTTTGGG CCGTGGGCAT TGCCTTAACG CCGCAGTTTG TGCGCTCGAT TCATCAATCG GTGCATGAAG AGTTACAAAA AGAATACGTG ACTGCCGCCC GTTTAGACGG TGCCAATTCG CTGCAGATTT TTTGGTATGT GATCATGCCA AACGTCTGGG AAGTGGTGAT TATTCAGACC ACGTTAGCCA TTTCGGCCGC GATTTTAGAT ATTGCCGCCC TTGGTTTTTT AAGCCTTGGC GCCCAAGCTC CGAGCCCTGA ATGGGGTGCA ATGGTTGCCC AAGGCATGGA TAATTTATTG ACCGCACCTT GGACTGTGAC CATCCCAGGG CTTGCGATTC TTTTTAGTGT GCTCGCTATT AACTTGGTGG GCGATGGCTT GAGATCGGCG CTTGCGCCCA TCAGAAACTA A
|
Protein sequence | MPPIKIYQED QIASPMMRVW QNFSANPFAL AGLWTIAFLL LLTLFGPMIA PFSPEAQDPR ALLLPPSWDP SGTVAHFLGT DDLGRDIFSR LLHGAHLTFG MALMIVGTAL FMGFIIGSLS GMMRGLKSSI LGHLLDALLS IPSLLMAILV VAVMGPGLDN VFWAVGIALT PQFVRSIHQS VHEELQKEYV TAARLDGANS LQIFWYVIMP NVWEVVIIQT TLAISAAILD IAALGFLSLG AQAPSPEWGA MVAQGMDNLL TAPWTVTIPG LAILFSVLAI NLVGDGLRSA LAPIRN
|
| |