Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2399 |
Symbol | |
ID | 4256024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2841831 |
End bp | 2842535 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638123068 |
Product | 3-oxoacid CoA-transferase, A subunit |
Protein accession | YP_738442 |
Protein GI | 114047892 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.619037 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.301135 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAGGAC TCAATAAAGT CGTCAGCAGC TATGAAGAAG CGTTAGCAGG TTTATCCGAT GATATGACCA TTATGGTTGG CGGTTTTGGC CTGTGCGGTA TTCCTGAAGG CTTAATCAAT CAAATGGTTA AGATGGGCGT TAAGGGCTTA ACCGCCATTT CAAACAACGC TGGTGTGGAT GATTTCGGTC TGGGCTTATT GTTAAAACAT CGCCAGATTT CGACCATGAT CGCCTCCTAT GTAGGTGAGA ACGCCACTTT CGAACAGCAA ATGCTCTCGG GCGAACTGAA TGTGATTTTA ACGCCGCAGG GCACGCTGGC GGAAAAAATC CGCGCGGGCG GCGCAGGTAT TCCAGCATTC TTTACCGCCA CAGGCTACGG TACCCCCGTG GCGGAAGGTA AAGAAACCCG TGAAATCAAA GGCCGTCATT ATGTGTTAGA AGAATCTCTG ACTGCCGATT TTGCCCTCGT TCGCGCTTGG AAAGCCGATA CTATGGGTAA CTTAGTGTTC CGCAAAACCG CCGCCAACTT TAACCCTATG ATGGCAACTG CGGGCAAAAT CACAGTAGTG GAAGCCGAGT TTATTGTGGA GCCGGGCGAG CTCGATCCTG ATCATATCCA TACTCCCGGC ATTTATGTTG ATCGCGTCAT CCAAGGCAAG TTCGAGAAAC GTATCGAGCA GCGCACGGTA AAAGCGGCGA AATAA
|
Protein sequence | MAGLNKVVSS YEEALAGLSD DMTIMVGGFG LCGIPEGLIN QMVKMGVKGL TAISNNAGVD DFGLGLLLKH RQISTMIASY VGENATFEQQ MLSGELNVIL TPQGTLAEKI RAGGAGIPAF FTATGYGTPV AEGKETREIK GRHYVLEESL TADFALVRAW KADTMGNLVF RKTAANFNPM MATAGKITVV EAEFIVEPGE LDPDHIHTPG IYVDRVIQGK FEKRIEQRTV KAAK
|
| |