| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2391 |
|---|
| Symbol | |
|---|
| ID | 4256016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2830346 |
|---|
| End bp | 2832268 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638123060 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_738434 |
|---|
| Protein GI | 114047884 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.977158 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGAG GCCTTATGAC AGATGTTGGA CAACAATTAC ATCAGACATC TATTACGAAT
AAACAGGCAT TTTGGCAACA AGCGGCCAAG GCCTTAGACT GGGTTACGCC GAGCAAACAA
ATATTAGATG AAAGCGAGGC ACCGTTTTAT CACTGGTTTA GCGATGGCGA GTTAAACACT
TGCTACAACG CGGTTGATAG GCATGTGTTG GCGGGGCGCG GTGAGCAGAT TGCTCTTCAT
TATGTTAGCC CTGTGACTGA AACCGAATAC AGCATTACTT ACCGTGAGTT ACTGGCTCAG
GTGGCAAGGC TTGCGGGCTA TTTGCAAAGC GTTGGCGTGA CTAAGGGAGA CCGCGTGGTC
ATCTACATGC CCATGGTGCC CGAGACCGCC TATGCCATGC TTGCCTGCGC GCGAATTGGT
GCCATCCATT CTGTGGTCTT CGGTGGCTTT GCGGCCAATG AGCTGGCGAC CCGGATCAAT
GATGCCAAAC CGAAGCTCGT AATGTCTGCC TCCTGCGGGA TTGAGCCTTC AGGCGTTGTG
CCCTATAAAC CCTTACTAGA TAAAGCATTA AATGAAGCAA CGCACAAGGT CGAGCATTGC
TTGATTTTAA ATCGCCCCCA ATATGAGGCG CAGATGCAAG CGGGGCGCGA TAAGGACTGG
CAAACAGCCT TAAGCGCTAG CAACAATGCC GATTGTGTGA CGGTGAAAGC CACCGATCCC
CTGTATGTGC TTTATACCTC GGGGACCACG GGTCAACCCA AAGGCGTGGT GCGGGATAAT
GGCGGCCATG CGGTGGCATT GGCTTGGTCC ATGGCCAATA TTTACGATAT TGCCCAAGGG
GATGTATTTT GGGCGGCATC GGATGTGGGC TGGGTGGTGG GACACTCCTA TATTGTCTAT
GGTCCGCTAC TTGTCGGGGC GACGACCTTG TTATATGAAG GTAAACCCGT AGGTACGCCA
GACCCAGGTG CCTTTTGGCG CACAATTGCA AAGTATCGAG TCAAAAGCTT TTTCACTGCG
CCCACGGCGA TCCGCGCCAT TAAGCGCGAA GATCCCGACG GCGAATTTAT CCAAGGTGTC
GATTTAAGCT GCTTGAAGAA TGTCTTTTTG GCTGGGGAGC GCTGCGATCC CGATACCTTA
CATTGGGCCG AAGCCAAACT GAATAAACCG GTTATCGACC ATTGGTGGCA AACTGAAACG
GGCTGGCCAG TGGCGGCAAA TTTGATGGGT GTGGCACCTA TTGCCGTTAA AGCGGGATCG
CCGGGCCGAC CTGTCCCAGG ATATGAGGTT GATCTAGTCG ATGAGATGGG CGCCAAAGTG
GCGGCGAATG TATCTGGCAA TGTGGTCATC AAATTACCAC TACCACCGGG CACGCTCACT
ACGCTCTGGC AAAATAATAA ACGCTATCAA GACAGTTACT TATCTATGTA TCCAGGCTAT
TACCTTACAG GGGATGCGGG TTATATGGAT GAAGATGGCT ATCTGTATAT CATGAGCCGT
ATCGATGACA TTATTAACGT AGCGGGCCAT CGACTCTCCA CAGGGCGGTT TGAAGAGGTT
TTGTGTCAGC ATCCCGATGT GGCCGAAGCG GCCGTGATTG GTGTCGACGA TAAACTCAAA
GGCCAAGTGC CCTTGGGCTT AGTGGTACTA AAAAAGGGAG TGACCATTAC GGACGAGGAG
CTGCATAAGC AGTTAATTGC CCTCGTTCGC CAAGAAATTG GTCCCGTCGC GTCCTTTAGG
TTGGTGAGCG CGATTCAAAA GCTGCCGAAA ACTCGCTCGG GTAAAATCCT GCGCGGCACT
ATGCGTAAAA TTGCCGATAA TCAGCAATAT ACGGCGCCAG CGACCATTGA AGACCCGCAG
ACCCTCGATT TAGTCCGCAC GACCTTAACC CGCATGGGCT ATGCCGATGC TCTCGTGGGG
TAA
|
|---|
| Protein sequence | MMGGLMTDVG QQLHQTSITN KQAFWQQAAK ALDWVTPSKQ ILDESEAPFY HWFSDGELNT
CYNAVDRHVL AGRGEQIALH YVSPVTETEY SITYRELLAQ VARLAGYLQS VGVTKGDRVV
IYMPMVPETA YAMLACARIG AIHSVVFGGF AANELATRIN DAKPKLVMSA SCGIEPSGVV
PYKPLLDKAL NEATHKVEHC LILNRPQYEA QMQAGRDKDW QTALSASNNA DCVTVKATDP
LYVLYTSGTT GQPKGVVRDN GGHAVALAWS MANIYDIAQG DVFWAASDVG WVVGHSYIVY
GPLLVGATTL LYEGKPVGTP DPGAFWRTIA KYRVKSFFTA PTAIRAIKRE DPDGEFIQGV
DLSCLKNVFL AGERCDPDTL HWAEAKLNKP VIDHWWQTET GWPVAANLMG VAPIAVKAGS
PGRPVPGYEV DLVDEMGAKV AANVSGNVVI KLPLPPGTLT TLWQNNKRYQ DSYLSMYPGY
YLTGDAGYMD EDGYLYIMSR IDDIINVAGH RLSTGRFEEV LCQHPDVAEA AVIGVDDKLK
GQVPLGLVVL KKGVTITDEE LHKQLIALVR QEIGPVASFR LVSAIQKLPK TRSGKILRGT
MRKIADNQQY TAPATIEDPQ TLDLVRTTLT RMGYADALVG
|
|---|
| |