Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2232 |
Symbol | |
ID | 4256996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2649320 |
End bp | 2651413 |
Gene Length | 2094 bp |
Protein Length | 697 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638122900 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_738277 |
Protein GI | 114047727 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00504018 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.175561 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGAGTA GTCGTTTTCA AGATGCGGAT ACACAAGTTC AACTTATCCA ATTGGCACCC TTATTGAATC AGGCTGGTGT CTACATATTC ACGAAAGACC ATGCTGATCG CTATACCTTC GTAAATGAAG CTGTCTGTAA ATTTTATCAG GCATCCTTGC CAGAAATCTT GGGGCAGAAG GCTGAACAAT TCTTGGAGCT TGGGCTAGCA AAAATACTGC GCGAAGGAGA TAAAAGGGTT TTACAACAGG GTCAAGAATT ATTAATGGAG GAGGAGCTGG TCGTTAGAAA GACCAGAGAA AAACGGCTTT TTTGGTCAAT TAGAATACCA CTACGAGACA TTAACGGTGA TATTTCTGGA CTATTTGGCA TATCGATTGA CATCACAGGC CGCAGAAGTA TTGCAGATAG AATTGGTGAG CACAATCAAT TGCTTAATAC TCTTCTTTCA AACATTGATG CCTTTGTTTA TATGAAGTCG ATTGACGGTA AATATCTATA TGCTAATCAC AAAATTGTTG AACTCCACAA TCGTTCATTA AGTGATATTA TCGGTAAAAC CGATCTCGAA TTGATGAATG AGAATTTTGC GGATCCTTTA ATGGAGATGG ATAAGCAAGT TTTTCAATCC GGTTTGCGTA AGAGTAAACA AGAAATAGTC GTTGGAGCCG ACGGTATTGA ACGTTCTTTT TGGTCAATAA AAGTACCGAT AAAACTGCCG GGACAAGAAC CTGCATTAGT TGGATTTTCA ACTGAAATCA CTGAACTCTT ACAACTCAAG GAACATCTAG AATATCAGCG TGTTACAGAT AATCTGACCG GCCTTCCTAA CCAGCACAAA TTTGAACAAT CGTTACAACT AGCACTGGAC AATGCAAAGC GTTCTAAACA ACAGTTAGCG GTATTACTGA TAAATTTTGA TCAGTTTAAA TATGTAAATA ATGCATTGGG TCATGAATCT GCAAATGAGA TTATCAAAGC AGCTGCTAGA CGGTTGGATC AGTGTGATTG GTTGTCCGGT AGTCTTGCCA GATTTTCCAG TGGTGACTTT GCCATATTAC TGGCAAAAAC AGGATCGGCA GACGAAGTGG CCATGGTCGC AGAACGTCTA CGAATGGTAT GTTCCGAACC ATATCGGGTT GCAGGACAAG TCTTTCATCT AACGGCGAGT GTGGGTGTCA GTAGTTACCC TGCAGATGGC GATATGGTTT GGCACTTAAT TAAACATGCC GAATCAGCTA TGTATCATGC CAAAGATCAA GGGCGCGATC AGATACAGTT TTATTCTGCT CATCTCAGTA AAGCCGTATC TGAGAGAATA CTGTTAGAAC GGGATTTGCG CATTGCTTTA ATAGAGAAAC AATTTGAACT CTATTACCAA CCCAAAATAC GCTTGGCAGA CAAACAAGTC GCAGGAGTTG AGGCCCTACT CCGCTGGAAC AGACCCATGC ATGGCTTTAT GTCTCCAGCA TTGTTTATCC CTCTGGCAGA GAGCCTTGGT TTGATAAATC AAATTGGCGA CTGGGTGATA GAAACAGCCT GCCAACAATT ATCAGCATGG TCGACTCAAG GATTAGGTGA AGTTCAAATA GCCGTTAATC TTTCTCCCAG CCAACTAACC AGTTCCACAT TACTAGACCG GGTGAAGTTG TTACTTGCTC AATATGCAAT TAAACCCAAC ATGCTGGAAA TGGAGGTAAC AGAGTCAATG ATGATGCACA ATCCCGAGGA AGCCATCAGT AAACTCCAAG CATTGAGAGA ATTGAATATC CAACTTTATA TTGATGATTT TGGCACGGGT TACTCATCCA TGTCATATCT TAAACGCCTA CCGATCAATG CGTTGAAACT GGATCGCAGT TTCATTATTC ATATGGCCAC CGATCCCCGT GATGCCGATG TTTGTGAAGG GATAATCGAA CTGGCGCATA AACTCGGATT AGATGTGGTG GCCGAAGGTG TTGAAACTCA AGCACAATAT GATGCATTGC TTGAGCGAGG TTGCGATATT ATTCAGGGCT ATTTGTACAG CCGTCCTTTG CCAATAGAGC AAGTCTCCCG TTTTTTATTA AAGCATTTAA TGTGTAAGGC CTGA
|
Protein sequence | MPSSRFQDAD TQVQLIQLAP LLNQAGVYIF TKDHADRYTF VNEAVCKFYQ ASLPEILGQK AEQFLELGLA KILREGDKRV LQQGQELLME EELVVRKTRE KRLFWSIRIP LRDINGDISG LFGISIDITG RRSIADRIGE HNQLLNTLLS NIDAFVYMKS IDGKYLYANH KIVELHNRSL SDIIGKTDLE LMNENFADPL MEMDKQVFQS GLRKSKQEIV VGADGIERSF WSIKVPIKLP GQEPALVGFS TEITELLQLK EHLEYQRVTD NLTGLPNQHK FEQSLQLALD NAKRSKQQLA VLLINFDQFK YVNNALGHES ANEIIKAAAR RLDQCDWLSG SLARFSSGDF AILLAKTGSA DEVAMVAERL RMVCSEPYRV AGQVFHLTAS VGVSSYPADG DMVWHLIKHA ESAMYHAKDQ GRDQIQFYSA HLSKAVSERI LLERDLRIAL IEKQFELYYQ PKIRLADKQV AGVEALLRWN RPMHGFMSPA LFIPLAESLG LINQIGDWVI ETACQQLSAW STQGLGEVQI AVNLSPSQLT SSTLLDRVKL LLAQYAIKPN MLEMEVTESM MMHNPEEAIS KLQALRELNI QLYIDDFGTG YSSMSYLKRL PINALKLDRS FIIHMATDPR DADVCEGIIE LAHKLGLDVV AEGVETQAQY DALLERGCDI IQGYLYSRPL PIEQVSRFLL KHLMCKA
|
| |