| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2172 |
|---|
| Symbol | |
|---|
| ID | 4256113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2572669 |
|---|
| End bp | 2574648 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638122840 |
|---|
| Product | helicase c2 |
|---|
| Protein accession | YP_738217 |
|---|
| Protein GI | 114047667 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCAAG CCAAACTTCA GCAATCTAAT CAGCAGTCGA GCGACGCTCA ACGTCCGATG
AGCCGATTGG CGAGTGAAGT GCTGCGCGCT TTTGCCAGCG ATGGGGTGCT CGCCAAGCAT
ATTCAAGGGT TTAGTGCGCG TCAGAGTCAG GTTGAAATGG CGCAAATCAT CAGTGAAGCG
ATTGCGAGTA AGGGCAATGC ACTGATTGAA GCGGGCACTG GGGTCGGTAA AACCTTCGCG
TATTTAATTC CGGCGATCTT AAGTGGCAAG CAAGTAATCG TGAGCACGGG CAGTAAAAAC
CTGCAGGAGC AATTGTTTCT AAAGGATTTA CCCGCATTGA CATCTATGCT TGGGATTGCG
CCCAAGCTTG CGTTATTAAA AGGCCGCAAT AACTATTTAT GCCAGCATCG ACTCGATAGG
CAGATGCAGG AGGCCAGCCA TATTGAGACG CGGTTATTGG ATGATTTACT CAAGATCAAC
CAATGGGCGG GCATGAGTAA AGATGGCGAT ATCGGTGGCT TAACCTCTGT TGCCGAAAAC
TCACCCGCGC TTCCCTTAGT GGTCAGTACC AAAGAGACCT GTATTGGCCA GCGCTGTGAA
TTTTATGATG CCTGTTTTAC CCGCAAGGCC CGCAGCCGCG CCATGGACGC AAAAATCATT
GTGGTGAATC ATCACTTATT CTTTGCCGAC AGCGTATTAA AGGATACGGG CTTTGCCGAG
CTGTTGCCGG ATCCCGATGT CGTGATCTTC GATGAGGCGC ATTTGTTGCC AGACATCTGC
GTCAGTTACT TTGGGCAGCA ATCGTCGAGT CGCACCATTG ATGATTATCT GCAAAAGTTA
TTGCAGATTT ATCAAACTGA GCTCAGCGAT ACGGGGCAGA TTGCTCAATT TTGTCAGCGC
TGTTTAACCA AGTTAAGTGA TTGGCATAAT GCGTTATTTT CGAGTGGCGA GTCGGACTGG
CGGATGCAGC TTGGCAATAA ATCCATCGCC TTAGCTTCTT GGGATTTATT AGCTGAATTA
ACCGCACTGC AAAAGCTGTT ACTTGTACAC GTTGGGCGCA GTGAATTATT GGATGATATT
GCGGTAAAGC TGACTGAGCT TAATCATAAA CTAAATCAAT TTTTTAATTG TGATAACCCG
CAGGCGGCGT ACAGCGTTGA GTTTGGTAGC CGCTTTGTGA TGCTACGTAT GTCACCCATT
AATATTGCCC GCGAGTGCCA GCAGCTATTT GTCGCGAATA CTAGCTGGAT TTTTACCTCG
GCGACCTTGC AAGTGAACCG CAGCCTAGGG CATTTTGCAC AGGAGCTTGG GATAAGCGAT
GCCAAGGCGC ATATTTTAGA CAGTCCCTTC GATTATCCGC GTCAGGCGTT ATTTTGTGTG
CCGAGGCAAC TGGGAAATGT GGCGAATCAG CAGCAAGCGC TTAAGCAGTT AGTCGATGTG
TGTGTCAAAG CGATTGAGGC GGCGCAGGGG CGAACCTTTA TTCTGTTTAC CAGCCATAAA
ATGCTCGAGC AAACCGCGCT GGCATTGCGC ACACGAACTC AATATCCACT CTTGGTGCAA
GGGCAGGCGG GCAAGCAGAG TCTGCTGACC AAGTTTCGCC AACTGGGGAA TGCGGTGTTA
CTGGGCACGA GCAGTTTTTG GGAAGGGGTG GACGTGCGCG GCAAGTTATT AAGCTGCGTG
ATTATCGATA AGCTGCCCTT TGTGTCACCC GATGAGCCGC TTTACCGTGC CCGCGCCGAC
AATATCAGCC GTCAGGGCGG CGATCCTTTT ACTCAAGTGT CATTACCTCA GGCGATTATT
GCGCTCAAAC AAGGGGTTGG ACGTTTGATC CGTGACGAAA AGGACTGCGG TGTACTCATT
CTTTGTGATA ATCGAATTGT GAATCGCGCC TACGGACAGG CGTTTTTAAA CTCATTGCCG
CCGATGGCGC GTACCCGAGA TTTAGACCAA GCCCTGCAAT TTTTAAGGAC AATCCCTTAA
|
|---|
| Protein sequence | MRQAKLQQSN QQSSDAQRPM SRLASEVLRA FASDGVLAKH IQGFSARQSQ VEMAQIISEA
IASKGNALIE AGTGVGKTFA YLIPAILSGK QVIVSTGSKN LQEQLFLKDL PALTSMLGIA
PKLALLKGRN NYLCQHRLDR QMQEASHIET RLLDDLLKIN QWAGMSKDGD IGGLTSVAEN
SPALPLVVST KETCIGQRCE FYDACFTRKA RSRAMDAKII VVNHHLFFAD SVLKDTGFAE
LLPDPDVVIF DEAHLLPDIC VSYFGQQSSS RTIDDYLQKL LQIYQTELSD TGQIAQFCQR
CLTKLSDWHN ALFSSGESDW RMQLGNKSIA LASWDLLAEL TALQKLLLVH VGRSELLDDI
AVKLTELNHK LNQFFNCDNP QAAYSVEFGS RFVMLRMSPI NIARECQQLF VANTSWIFTS
ATLQVNRSLG HFAQELGISD AKAHILDSPF DYPRQALFCV PRQLGNVANQ QQALKQLVDV
CVKAIEAAQG RTFILFTSHK MLEQTALALR TRTQYPLLVQ GQAGKQSLLT KFRQLGNAVL
LGTSSFWEGV DVRGKLLSCV IIDKLPFVSP DEPLYRARAD NISRQGGDPF TQVSLPQAII
ALKQGVGRLI RDEKDCGVLI LCDNRIVNRA YGQAFLNSLP PMARTRDLDQ ALQFLRTIP
|
|---|
| |