Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2025 |
Symbol | |
ID | 4258625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2385654 |
End bp | 2387033 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638122692 |
Product | MATE efflux family protein |
Protein accession | YP_738071 |
Protein GI | 114047521 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0331062 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.321717 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCATT CAGGCTTTCA GGCCAAACGC TTAATTCAAC TCGCACTCCC AGTGTTGATC GCCCAAGTGA CACAAACCAT GATGGGGTTT ATCGATACTG TCATGGCGGG CCGCGTCAGT GCTGTCGATA TGGCCGCTGT GGCCGTAGGA ACCAGTCTTT GGTTACCCGC CATCTTATTT GTCCAAGGGC TGCTGATGGC GTTTACGCCA TTATTTGCCC ATCACAATGG CGCAAATAAT CAGAAAGCCA TTCAACCGCT GGCGTTTCAA GGCGCTTATC TGGCCTTAAT TGGTGGCCTT GGGGTGATGG CGTTTCTCGC ATCCGCGCCA CTCGTGCTCA GCCATATGAA TTTAGAGCCC CAATTGTACA ACTTAACCAT AGGATATATC GACGGTATTT TATGGGGCGC GCCCGCATTT GTGCTCTACC AGGTATTACG CGGTTGCAGT GAAGGGATTT CTTACACATT ACCGACCATG ATCATCGGAT TCGTGGGGTT AGCGGTGAAT ATTCCGGCAA ACTATATCTT TATCTATGGC CATTTCGGCG TGCCTGCCAT GGGCGGCGCC GGTTGTGGTG TCGCGACCGC ACTGGTGTTT TGGGCCATGT TGATAGCCAT GACAATTTAT ATGCAGTTTC ATAAAAAGTT TGCCGCATTG GCGCCCTTTA GCCAGTTCCA TCGCCCCGAT TTTGCCACTA TGAAGAAGAT GACGAAGCTT GGGATGCCGA TTGCGATGGC CCTCTTCTTT GAGGTGAGCC TGTTTGCGAT TATCGCCCTG CTGCTGGCAC CATTGGGCGC GACTGTGGTG GCCAGCCATC AGATTGCGTT GAACTTCTCC GCCATAGTAT TTATGTTGCC ACTTTCGATA GGTATTGCCG TCTCGATTCG TATTGGCTAC TACCTCGGCC GCGATCGTGC GGATATTTCT GCCGTGGTGG CAAAGGTCGG ATTGTGGTTG GCGCTTTCAT TGGCCTTGTC GACGGCAATC TTAACTGTGT TATTCCGTTT CCAAATCGCC GAGTTGTATA ACAGCGATCC CGAAGTGGTG GTACTTGCGG GCAGTTTGAT GCTGATGGCC GCGCTGTATC AATTATCTGA CTCAGTACAG GTGGTCGCCG CCGGCGCCTT GCGTGGATAT AAAGATACCC GCAGTGCATT TTACATTACC CTGTTCTCCT ATTGGGGGAT CGGCATGACA TTAGGTTACA CCTTGGCGTA TACCGATTTT ATCGTCCCCG CCATGGGCGC CCATGGTTTT TGGACCGGGT TAATTGCAGG CCTCACCTCG GCGGCGCTGC TGTTTTTCAT CCGCCTTCGT TATATTCAAA AGCATGGTGT GCATTTAAGT TTGATTGAAG GCGACAGCGT GCATCACTAA
|
Protein sequence | MNHSGFQAKR LIQLALPVLI AQVTQTMMGF IDTVMAGRVS AVDMAAVAVG TSLWLPAILF VQGLLMAFTP LFAHHNGANN QKAIQPLAFQ GAYLALIGGL GVMAFLASAP LVLSHMNLEP QLYNLTIGYI DGILWGAPAF VLYQVLRGCS EGISYTLPTM IIGFVGLAVN IPANYIFIYG HFGVPAMGGA GCGVATALVF WAMLIAMTIY MQFHKKFAAL APFSQFHRPD FATMKKMTKL GMPIAMALFF EVSLFAIIAL LLAPLGATVV ASHQIALNFS AIVFMLPLSI GIAVSIRIGY YLGRDRADIS AVVAKVGLWL ALSLALSTAI LTVLFRFQIA ELYNSDPEVV VLAGSLMLMA ALYQLSDSVQ VVAAGALRGY KDTRSAFYIT LFSYWGIGMT LGYTLAYTDF IVPAMGAHGF WTGLIAGLTS AALLFFIRLR YIQKHGVHLS LIEGDSVHH
|
| |