Gene Shewmr7_2015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2015 
Symbol 
ID4258615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2378026 
End bp2379141 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content47% 
IMG OID638122682 
ProductL-alanine dehydrogenase 
Protein accessionYP_738061 
Protein GI114047511 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0686] Alanine dehydrogenase 
TIGRFAM ID[TIGR00518] alanine dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000641536 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0233457 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTATTG GTGTACCAAA GGAAATTAAA AACCACGAGT ATCGTGTCGG TATGGTTCCT 
TCAAGCGTTC GCGAATTGAC CATCAAAGGT CATGAAGTGT TTGTTGAAAC TAATGCCGGC
ACGGGAATTG GTTTTTCTGA TCAGGATTAT GTTGATGCAG GTGCCAAAAT ATTAGCAACT
GCTGCTGAAG TCTTTGCTAA AGCAGAGATG ATCGTAAAGG TAAAAGAGCC TCAAGCAGTC
GAACGCGCTA TGCTGCGTCA TGACCAGATT TTATTCACTT ATCTGCATTT AGCGCCAGAT
TTACCACAAA CTGAAGATTT AATTAAAAGT GGTGCCGTGT GTATCGCTTA CGAAACCGTG
ACTGATGACC GTGGTGGCTT ACCTCTGCTG GCCCCAATGT CTGAAGTGGC TGGTCGCATG
TCGATTCAAG CAGGCGCGAT GGCATTAGAA AAATCCTCTG GTGGTCGCGG CATGTTATTA
GGCGGTGTTC CAGGTGTTGA GCCTGCAAAA GTAGTGATCA TCGGTGGTGG CATGGTCGGT
ACCAATGCTG CACAAATGGC TGTGGGTATG GGCGCTGATG TCGTTGTTCT TGACCGTAGC
ATCGATGCAC TGCGTCGCTT AAACGTACAA TTTGGTTCTG CAGTTAAGGC TGTTTACTCA
ACTGCCGATG CAATTGAGCG CCATGTATTA GAAGCTGATC TTGTGATTGG TGGCGTATTA
ATTCCAGGTG CTGCGGCGCC TAAGCTTGTA ACACGTAGCA TGATCGCACG CATGAAGCCA
GGCAGTGCTA TCGTTGACGT AGCAATCGAT CAAGGTGGTT GTGTCGAAAC TTCACATGCA
ACGACTCACC AAGATCCAAC CTACATCGTT GATGACGTGG TGCACTACTG TGTGGCAAAC
ATGCCAGGTG CTGTAGCCCG CACTTCAACC TTCGCTCTGA ATAACGCGAC TCTGCCTTAT
ATCCTTAAGT TAGCTAACTT AGGTTATAAA GCCGCCCTGT TACAAGACAA ACACTTACTG
AACGGTTTGA ACGTGATGCA CGGCAAACTG GTTTGTAAAG AAGTGGCGCA AGCATTAAAT
CTTGAGTACA CAGCGCCAGC AAGTTTATTA GCCTAA
 
Protein sequence
MIIGVPKEIK NHEYRVGMVP SSVRELTIKG HEVFVETNAG TGIGFSDQDY VDAGAKILAT 
AAEVFAKAEM IVKVKEPQAV ERAMLRHDQI LFTYLHLAPD LPQTEDLIKS GAVCIAYETV
TDDRGGLPLL APMSEVAGRM SIQAGAMALE KSSGGRGMLL GGVPGVEPAK VVIIGGGMVG
TNAAQMAVGM GADVVVLDRS IDALRRLNVQ FGSAVKAVYS TADAIERHVL EADLVIGGVL
IPGAAAPKLV TRSMIARMKP GSAIVDVAID QGGCVETSHA TTHQDPTYIV DDVVHYCVAN
MPGAVARTST FALNNATLPY ILKLANLGYK AALLQDKHLL NGLNVMHGKL VCKEVAQALN
LEYTAPASLL A