| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1997 |
|---|
| Symbol | |
|---|
| ID | 4258683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2361333 |
|---|
| End bp | 2363006 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638122663 |
|---|
| Product | ribulokinase |
|---|
| Protein accession | YP_738043 |
|---|
| Protein GI | 114047493 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1069] Ribulose kinase |
|---|
| TIGRFAM ID | [TIGR01234] L-ribulokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00226612 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000285081 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATG TTTTAGGGGC TTACGCGTTA GGGCTTGATT ACGGCTCAGA TTCAGTTCGC
GCGTTATTGG TGGATACCCA AACGGGCGCA GAAGTAGCAA CAAATGTGGT GTACTACCCA
CGTTGGAAGA AGGGGCTTTT TTGCGATCCT GCCAAGAATC AATTTAGACA ACATCCCCTC
GATTACATCG AAAGCCTTAT CGAGGTAGTA CAAGGACTCT GGGCAAAAGC TCCCAGTGGC
GCCGCGCAAA GAGTCTGCGG TTTGAGTGTT GATACCACTG GTTCAACCCC GATTGCGGTT
GATGAATCCG GTGTTGCCTT AGCCTTAAAA CCAGAGTTTG CGAGTAATCC CAATGCTATG
TTTTTGCTTT GGAAAGATCA CAGCGCGATT CTCGAAGCCC AGCAAATTAC CGCTGCGGCA
AACAATGCAA GCGAAAATTA CCTGAAATAT GAAGGGGGAA TTTACTCCTC CGAATGGTTT
TGGGCGAAAG CGCTATTCGT ATTGCGCCAC GACACAGAAG TCAGACAAGC GGCCTATAGC
TGGGTCGAAC ACTGTGATTG GATCACCGCA TTAATGACAG GCACTACACA TCCAAAAGTC
TTTAAGGCAG GGCGCTGCGC CGCCGGTCAC AAAGTGATGT GGCATGAGTC ATGGAATGGT
TATCCGCCGA ATGACTTTTT CGTTGGCATC GACCCCTTAC TCGATGGATT GAGAGACAAG
TTACCGCTTG AAACCTGCAC ATCTGACAAA GTGTGCGGCC AGCTAACCCC AGAGTGGGCA
CAGCATTTAG GGCTATCGAC CGAGGTTATC GTGTCTTTTG GCTCATTTGA CTGCCACGCA
GGCGCCGTTG GAGCCAATGT TAAACCTGGC GTCTTAACCA AGGTGATGGG GACCTCTACC
TGCGACATTA CGGTCGCCAG TTATGACGAT ATAGGTGAGC GTTGTATCAA AGGCATTTGC
GGTCAAGTGG ATGGCTCAGT ATTGCCCGGG ATGATAGGGC TGGAAGCGGG TCAGTCAGCC
TTCGGCGATC TCTACGCTTG GTTTAAGGAT CTCACCGCAT GGCCGATGCA ACAGCTTGAC
ACCTCAGCCT TATTTGATGA CAACACCAAA GCCAAACTCA TTCCGCAACT CGAATCTGAA
ACCCTGACAA TGTTAGGCAA CGCGGCCGCA AAAATCCCCG TTGGTGAGAC AGGTATTGTC
GCGCTGGATT GGATTAACGG ACGTCGTACG CCCGATGCCG ACCAATCTGT TGCCATGGCT
ATCACAGGAT TAACCATGGG CAGCCAAGCA CCGCAAGTCT TCAAAGCTTT AGTGGAAGCC
AGTGCCTATG GCGCACGTGC CATTATCGAG CGCTTCAAAC AAGAAGGCGT TTGCATTGAC
CATGTGGTCA CCATTGGTGG GATCTCGAAA AAATCCGACT TCATTATGCA AACCTGTGCC
GATGTGTGGA ATTGCAACAT CGATGTACTC GAGAGCGAGC AAAGCTGTGC CCTAGGCGCC
GCTATTTATG CCGCAACCGC AGCCGGGGTT TATCCCGATG TGCTGAGTGC CCAAGCCGCC
ATGGCCTCAA ACGTTGCCAA AACCTATCAG CCAAATCCTG AAAATGCAGA GAAATATCAA
GCGCTTTACC AAGGGTACTT AGCCCTTGGC CACTATGTTG ATGGAGCGAA ATAA
|
|---|
| Protein sequence | MSNVLGAYAL GLDYGSDSVR ALLVDTQTGA EVATNVVYYP RWKKGLFCDP AKNQFRQHPL
DYIESLIEVV QGLWAKAPSG AAQRVCGLSV DTTGSTPIAV DESGVALALK PEFASNPNAM
FLLWKDHSAI LEAQQITAAA NNASENYLKY EGGIYSSEWF WAKALFVLRH DTEVRQAAYS
WVEHCDWITA LMTGTTHPKV FKAGRCAAGH KVMWHESWNG YPPNDFFVGI DPLLDGLRDK
LPLETCTSDK VCGQLTPEWA QHLGLSTEVI VSFGSFDCHA GAVGANVKPG VLTKVMGTST
CDITVASYDD IGERCIKGIC GQVDGSVLPG MIGLEAGQSA FGDLYAWFKD LTAWPMQQLD
TSALFDDNTK AKLIPQLESE TLTMLGNAAA KIPVGETGIV ALDWINGRRT PDADQSVAMA
ITGLTMGSQA PQVFKALVEA SAYGARAIIE RFKQEGVCID HVVTIGGISK KSDFIMQTCA
DVWNCNIDVL ESEQSCALGA AIYAATAAGV YPDVLSAQAA MASNVAKTYQ PNPENAEKYQ
ALYQGYLALG HYVDGAK
|
|---|
| |