| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1912 |
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| Symbol | |
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| ID | 4258651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2256909 |
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| End bp | 2258813 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638122567 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_737958 |
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| Protein GI | 114047408 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00115301 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATGT CTAAATCATA TCCCATCTTT TTATTGCTGA TTTTTTTAGG GCTGTTTGGT
TGGATTTATC ACAACGAAAA TAACCAGCTC CAGGTCCAGC AACAACAAGA GCTCAGTAAC
TTCAAACAAT ACTTGGGTAA TTTTTCCCAG TGGCAAGGCA ATGGCGCCGA GCTCTATCAA
ACTATTTCTG CCCATTACCC GCTGCAGTTT TTTCAATATA TTGATGATAC CGATGGACAG
CTCAATTACA CCCAAGGTGA GCTCAATTCC CAAGGTTCGC ATCCACTCTC TGGATTATTT
GCCTTAGATT TAGCTCATAC ACAAAAACTG GCCGCGGGTC GTTTGCAGGT AAAACTCAGT
GCCGACCAAG CGATTGAGAC TGCTATCGGC AGCACTCAGC AACTCGGCTT AGTATTGATA
CTCACCTACA TCATACTCTT GGTTGTGTTT GTATTGCTTA ACAACAAGTT AAGATCGGCT
ATCCGTTATG CGGCTGAGTA TATTTCCCAT ATTCCAGAGA TGAATTTTTC TGCCATTGAA
TCCTCCAAAC TCAATGGTGA AATGACGCCA GTGAGATTGG CACTCGAAGA CTGCCGCCTG
CAGCTTAAAT CGCAAATGGA TACCCTCACC CAAGAAAACC AGAAACTGCA TAAGGTGGCT
TATCAGGATC CGATCACCGG ATTTGGCAGT CGTCCGCGTT TTACCACTAA GTTGGAAAGC
ATTAGTAACC GCAGCGTGCC TCAACTTGGG CTGCTGGCCA TGGTTAAAGC GACAGAGCTT
TCCCATGTGA ACCAATTACA AGGTCGCTCC GCCGGTGATG ATTATCTAGC CAGCGTCGCC
AATTGCATTC GTAAAGCCTG TTCAAAATAT CCCGATTCTG AAAGCTACCG CGTCTCCAGC
GCCGATTTTG CGATCTTTTT ACCCGATTTA GTGTTAAAAG ACGGCCCTAA ATTTTTAGAA
CAACTTAAAG TATTCCTCGA TGAATACCAG CAGATGACGA GAGCTGAATC TGTGGCGCAC
ATTGGTTTAG TGCCTTACCA ACAGGGCACA GATCCCGTTA ACCTGCTCTC CTTGGCGGAC
ACCGCCGTGA GCATAGCGCA AACCTTAGGC CCCAACAGTT TCCATATTCA AGAGAAACTC
AATGGTGACG AGCAGTTTGG CGACGACCGT TGGAAAGTGG CAATCAACGA CTTAATTAGC
CGCCAAGCGC TAAAATTTTT TCAACAACCC ATTCAACCTT GCCGCAATGA TGTCGAGGTT
TACCGCGAGT TACTGGCACG CTTTTACAAC AGCGAAGGCA AGTTTTTACC CACCACCACG
GTTATCGCCA TGGCCGAGCG CCACGGGATG AGCACCGAGT TAGATAAACT CGTGGTGATC
AGCACATTAA GAATGCTTAA AGAAAATCCG ACCATTAGCG GTAACTTTGG CATCAATATC
AGCGCTTTTT CGGCCCATCA AGAACTGTTT GTCGGCTGGT TGCGTGATGT TCTCGGCAAG
CACAGGTATA TCGCCTCACG TTTAGTGTTT GAGATCAACG AGTCAGGTAT GCAAGCCAAT
TTAGGTGCCA GCTATAAGTT TGTCCGTGAG GTTCACAGTG TTGGTTCGCG GGTCTCAATC
GAGCGATTTG GGATGAGCTT TACTTCCTTC AAATTCTTCA GCGAAGTACG CCCAGACTAC
ATTAAGCTCG ATGGCAGCTA CACCTCATCA ATCGATGAAG ACAGCAATAA TAAGTTCTTT
GTGCGGATGA TGGTGGATGT GGCAAGACGT ATCGGCATTC GTGTTATCGC GACGAGTGTC
GAACGTCAGG AGGAAAAACT GACCCTCGAA AAACTCCTCG TCGATGGGCT GCAGGGCTAT
TATATTGCCC AGCCGCAAGC CATTACCTTA ACTGACCAAA TTTAA
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| Protein sequence | MAMSKSYPIF LLLIFLGLFG WIYHNENNQL QVQQQQELSN FKQYLGNFSQ WQGNGAELYQ
TISAHYPLQF FQYIDDTDGQ LNYTQGELNS QGSHPLSGLF ALDLAHTQKL AAGRLQVKLS
ADQAIETAIG STQQLGLVLI LTYIILLVVF VLLNNKLRSA IRYAAEYISH IPEMNFSAIE
SSKLNGEMTP VRLALEDCRL QLKSQMDTLT QENQKLHKVA YQDPITGFGS RPRFTTKLES
ISNRSVPQLG LLAMVKATEL SHVNQLQGRS AGDDYLASVA NCIRKACSKY PDSESYRVSS
ADFAIFLPDL VLKDGPKFLE QLKVFLDEYQ QMTRAESVAH IGLVPYQQGT DPVNLLSLAD
TAVSIAQTLG PNSFHIQEKL NGDEQFGDDR WKVAINDLIS RQALKFFQQP IQPCRNDVEV
YRELLARFYN SEGKFLPTTT VIAMAERHGM STELDKLVVI STLRMLKENP TISGNFGINI
SAFSAHQELF VGWLRDVLGK HRYIASRLVF EINESGMQAN LGASYKFVRE VHSVGSRVSI
ERFGMSFTSF KFFSEVRPDY IKLDGSYTSS IDEDSNNKFF VRMMVDVARR IGIRVIATSV
ERQEEKLTLE KLLVDGLQGY YIAQPQAITL TDQI
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