| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1910 |
|---|
| Symbol | |
|---|
| ID | 4258649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2255623 |
|---|
| End bp | 2256204 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638122565 |
|---|
| Product | electron transport complex protein RnfB |
|---|
| Protein accession | YP_737956 |
|---|
| Protein GI | 114047406 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2878] Predicted NADH:ubiquinone oxidoreductase, subunit RnfB |
|---|
| TIGRFAM ID | [TIGR01944] electron transport complex, RnfABCDGE type, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000153045 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCA TGTTAATTGC CGTTATTTTA TTAACCCTAT TGGCATTGTT CTTTGGGGTA
TTACTCGGAT TTGCCGCCTT AAAATTTAAG GTTGAAGGCA ATCCCATCGT CGATGAACTC
GAAGCGATTC TGCCACAAAC CCAATGCGGT CAATGTGGTT ATCCCGGTTG CCGTCCCTAC
GCTGAAGCAA TAGCCAATGG CGATAAAGTC AACAAGTGCC CGCCTGGCGG CACCGCGACC
ATGGAAAAGC TCGCCAGCTT AATGGGTGTA GAGCCAGAGC CGCTCAATGC CGAGGCCCAA
TCCCAAGTCA AAAAAGTCGC TTACATTCGC GAAGATGAAT GTATTGGCTG TACTAAATGT
ATTCAGGCCT GTCCTGTCGA CGCCATTATT GGCGCGGGCA AACTCATGCA TACCGTGCTC
ACGGCAGACT GCACAGGTTG CGATCTCTGT GTCGAGCCCT GCCCCGTTGA CTGTATCGAT
ATGATCCCTG TGGGCCAAAA TCTTAAAAAC TGGAACTGGC GCCTAAACGC TATTCCCGTG
ACTCTTATCC AAGAGACCCC GCACGAAGAA AAGAGAGGAT AA
|
|---|
| Protein sequence | MSTMLIAVIL LTLLALFFGV LLGFAALKFK VEGNPIVDEL EAILPQTQCG QCGYPGCRPY
AEAIANGDKV NKCPPGGTAT MEKLASLMGV EPEPLNAEAQ SQVKKVAYIR EDECIGCTKC
IQACPVDAII GAGKLMHTVL TADCTGCDLC VEPCPVDCID MIPVGQNLKN WNWRLNAIPV
TLIQETPHEE KRG
|
|---|
| |