| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1852 |
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| Symbol | |
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| ID | 4256709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2175305 |
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| End bp | 2179114 |
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| Gene Length | 3810 bp |
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| Protein Length | 1269 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638122509 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_737900 |
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| Protein GI | 114047350 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAGG TATCACCCGC TTTGCCGTTA GATCCGCTCA CCCTGCCATT TGGCGGCAGT
CGCTTAATCG AGGCCAGTGC GGGCACGGGT AAAACCTATA CCATTTCAGG CCTGTATCTC
AGATTACTGC TTGGGGATGG CTTAAGCGAA CCGCTTAATT GTGAACAAAT TCTGGTCGTG
ACCTTTACCA ATGCCGCCAC CGAGGAGCTG CGGGACAGAA TTCGCCGCCG CATTCAGGTG
GCCTTTAAGT GTTTCTTAGG GCTTGAGATT AACGATCCTT TTGTGCAGGC GCTGTACGAT
AAGACCCCTG AAGCCGAGCG CGCTATCGCC CTAAGACGCT TCGATTTGGC GCTCAAATCC
CTCGACGAAG CGGCGATTTT TACCATTCAC GGATTTTGCC AACGGATCTT GGCCGATCTC
GCCTTCGAGT CATCATTGTT GTTCGAGTCG GATTTTACCT TGGACGACAG TGAGTTTTTG
CACCATGCGG TGCGGGATTT TTGGCGTGAG GCCTGTTATC CGCTGCCGGA GTATTTAGCC
CAAATTATTG CCAGCGAATT TGGCGATCCC GACGGATTAG TCAAGCAGCT GAGAGCATTG
CTCGGTGCCA GTGAGGCCAA ACCGCTTCAA CCCGTGCAGC CCTTTGCTCG TTTGGCAGAG
TCCTTAAGCC AGAGTGTGCA GCGCTTTAAA CTCGCTTGGC CGCGTGGCCG CGACGCGCTG
TTAGAGTTAC TTCATAGCCT GCCGCTTAAC GGTCAACGTT TTGGTAAGGC AAGCGACAAT
TACCCCAAAT TGGCGGAAAT GTTCGACCAA CTGGACAACT TCTTAGCCTT TGGCCACGGC
TTGCCGCCGC TTAAAGTGCT CGAAGCGCTG TCGTTATCCG AGCTTAAGCT GAATAAAGGC
GGCGTGCTCC CAAGTGCGAG CGAGGCGCCA CTGCTTGATC ATATGGAGCA GTTAGCCGCG
TTGATTAACG CGATAAAACC CGCATTTCTC TACAGCGCCA AACAAGGGAT CAGCGAGCGC
TTTGCCAAGC AAAAACAGCA GAAAAATGTA CTGACACCCG ATGATCTGCT CACTACTTTG
GCCGCAGCAA TGCAGGCCAA TCCCGACACT TTGCCTAAGG CAGTGGCGAG CCGCTTCCCC
GTGGCGCTTA TCGATGAGTT CCAAGATACG GATCCACTGC AATTTGCTAT TTTCTCAGGG
ATCTATCAAA CCCGTTTGGG GATTGATACT CAAGATCCGG CTGCTGAACC TAAGCCTCGC
ACGGATAGCA AATTAAGCCT GCTGATGATT GGCGACCCTA AACAGGCGAT TTATGCTTTC
CGCGGCGCCG ATATTTACAC CTATATCGAG GCGCGCAGAC AAACCCAGGC GCACTATTTC
CTCGACACTA ACTATCGCTC GAGTCGCAAT CTGGTTATGG GGGTGAATCA TTTATTTGCC
CAGCATTCGG ATCCTTTTAT CAGCCAATCA ATTCCCTTCG ATCCAGTCAA AACACCTGCC
AGTGCGGCAG CCAAACAACT CGTTGAGCAT GCGCCCAATA GCGCCGCGCT ACGGTTAAAA
CTCTTGAGTG AAGGCGAAAC TGGACTTAAT AAGGCCAGTG CGCGGCAAAC CTTGGCCGAA
GACACCGCCG CCGAAATCAC CCGTTTACTG ACGCAGGCCG TCAATGGTCA ATGCAGCACG
CCCAAAGGGC CATTAATTGC CAAAGATATC GCCATCTTAG TACGCGATAG AAACGAAGCG
GCCGTGATGA AAACCGCGCT GAGCAAGCGC CAGATTGGTG CCGTCTTTTT AAGTCGCGAC
AGCGTATTTG AAACCGTCGA AGCGCGGGAA ATGGCGCTCA TTCTGCGCGC CTTGGCCAGC
CCCAAGGACG AGCGCGCCCT GCGTAGCGCC CTTGCGACCG CCCTGCTTGG TTATCGCGCC
GAACAAATTC ATGCCTTTAA CCAAGATGAA GAGCAGCGCC AAAGGCTGCT AGAGCAGTTT
TTTGAGCTGC ACCAGATCTG GCAAAAACGC GGCATTATGC CGGCGCTGCT CAGCCTAGCC
AATGCCACCC AGATGGTTGC GCGGCGGCTG CATTCTCCCG CTTCGACAAG CACTGACCAA
GCGGAGCAAG ATGCGGAAGT TCATCTTGAG GCGAACAATG GCGAACGTCG ACTCACGGAT
TTTCGCCACT TAGCCGAGCT GTTGCAGCAA AAGGCGACCG AAATTGATGG GATGAGTGCC
CTGCTCAACT GGTATGAGCA ACAACTGATT GATAATACAG GGACAGATGA GCAGCAGCTA
CGCCTTGAAA GCGAGCAAAA CTTAGTGCAA ATCGTCACTA TCCATAAGAG TAAGGGGCTG
GAATACCCAG TGTGCTTCGT GCCCTTTGTC AGCCTCGCGC GGGATAATCG CCGCCGCCTG
ACACCTATGC TCTACCACAG AACCAATGCC GATGGCGCGC AGGAACTGGT GTGGGATTTA
GAAGGCACGG ATGAAGGTTG GGAACAGGCA AAGCAGGAAA CCTTAGCCGA AGATCTGCGT
CTGCTCTACG TGGCGCTCAC CCGCCCCGTG TACCTGTGTT ATTTGTACAT CGCCAACCAT
AGCCGCATGT TAAAGGCAGG GCTTAAAAGC CAGCTGCATG AAACCGCCAT CGGTTATTTG
CTTGGGATCA CTGACACTGA TTGTGATTTT TCGCGTCTGC AACATGCCGC CAAGGCGCTG
GTCGCGGGTC TCGAGTCGAG TCAGCCTGCG ATCAGCATTG AGGTGGTGGC CGATGACATT
GAGGCTAACA AGCTGCATAC GGGGGGAAGT GATTCTCATA CCTTGAGTGC CCGTAAGGTC
AGCCGTCAGT ATCGCACCCC ATGGCGCGTC GGCAGTTATT CCGGTTTAGT TAAAAATGCG
CCCCACGCTA AAGCCACACC CGGCGCCGAT GATGAAGTCA ACGCCGTATT GGGTACAGAT
ACCGCAAACA GCGCAGCTGA TCCCTTGTGG CAAGAGGCTT TGTTGCAAGA GGCTGCCGAT
ACACAAGCGC AACCTCTGCT TAATCGCTTT AGTTTTGAGC GCGGCGCCAA CGCGGGTAGC
TTTATGCACT TAGTGCTTGA GTTAATTGAT TTTACCCAAG CTCCAATCGA CCTACCCCGA
GAGCTACCTA AGGCCATGTT GCAATATGGC ATTGCCCCCG AGTGGCAACC CGTATTAGAA
GATTGGTACC TTGAGGTATT GCAAGCTCCG CTGGCGTTAA TGGCGCAGGA TAATCAACTT
ATCAATCCCG AACTCTGTTT AGCCGCACTC GCGCCGCAGC ACACCTTAGT CGAGATGGAG
TTTTACCTGC CTCTGAATCG CTTAAAGGAT ACTGAGCTTA ACCAACTCCT TAGGCAATTT
GGCTACGATA CCGAGCTGCA GTTTGACGAG TTACAGGGCA TGCTTAAGGG CTTTATCGAC
TTAACCTTTG AATATCAAGG AAAGTTTTAT ATAGCAGACT ATAAGTCGAA CCATCTGGGG
GATAATATTC AGGCCTATCA TCATAGCGCG CTAAAACAGG CGATTAGCGA CCATAGGTAT
GATTTGCAAT ATATTCTCTA CTCCCTTGCG CTGCACCGCT ATTTAGCGAT GCGCTTGCCC
AATTATGATT ACGATACCCA TATTGGCGGC TGTTATTATT TGTTTTTACG GGGAATGTCG
GTGCAATATC CAGGCTTTGG TATTTATTAC GATAAACCGC CCAAGGCGCT AATTTTGGCC
TTAGATGCGC TGTTTCAGCG CAGTCTAGAG GCAACAACTG ACTCAAATAA AAAGTCCGAT
GCTCAACTGG ATACGGGAGC AATGGCATGA
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| Protein sequence | MTKVSPALPL DPLTLPFGGS RLIEASAGTG KTYTISGLYL RLLLGDGLSE PLNCEQILVV
TFTNAATEEL RDRIRRRIQV AFKCFLGLEI NDPFVQALYD KTPEAERAIA LRRFDLALKS
LDEAAIFTIH GFCQRILADL AFESSLLFES DFTLDDSEFL HHAVRDFWRE ACYPLPEYLA
QIIASEFGDP DGLVKQLRAL LGASEAKPLQ PVQPFARLAE SLSQSVQRFK LAWPRGRDAL
LELLHSLPLN GQRFGKASDN YPKLAEMFDQ LDNFLAFGHG LPPLKVLEAL SLSELKLNKG
GVLPSASEAP LLDHMEQLAA LINAIKPAFL YSAKQGISER FAKQKQQKNV LTPDDLLTTL
AAAMQANPDT LPKAVASRFP VALIDEFQDT DPLQFAIFSG IYQTRLGIDT QDPAAEPKPR
TDSKLSLLMI GDPKQAIYAF RGADIYTYIE ARRQTQAHYF LDTNYRSSRN LVMGVNHLFA
QHSDPFISQS IPFDPVKTPA SAAAKQLVEH APNSAALRLK LLSEGETGLN KASARQTLAE
DTAAEITRLL TQAVNGQCST PKGPLIAKDI AILVRDRNEA AVMKTALSKR QIGAVFLSRD
SVFETVEARE MALILRALAS PKDERALRSA LATALLGYRA EQIHAFNQDE EQRQRLLEQF
FELHQIWQKR GIMPALLSLA NATQMVARRL HSPASTSTDQ AEQDAEVHLE ANNGERRLTD
FRHLAELLQQ KATEIDGMSA LLNWYEQQLI DNTGTDEQQL RLESEQNLVQ IVTIHKSKGL
EYPVCFVPFV SLARDNRRRL TPMLYHRTNA DGAQELVWDL EGTDEGWEQA KQETLAEDLR
LLYVALTRPV YLCYLYIANH SRMLKAGLKS QLHETAIGYL LGITDTDCDF SRLQHAAKAL
VAGLESSQPA ISIEVVADDI EANKLHTGGS DSHTLSARKV SRQYRTPWRV GSYSGLVKNA
PHAKATPGAD DEVNAVLGTD TANSAADPLW QEALLQEAAD TQAQPLLNRF SFERGANAGS
FMHLVLELID FTQAPIDLPR ELPKAMLQYG IAPEWQPVLE DWYLEVLQAP LALMAQDNQL
INPELCLAAL APQHTLVEME FYLPLNRLKD TELNQLLRQF GYDTELQFDE LQGMLKGFID
LTFEYQGKFY IADYKSNHLG DNIQAYHHSA LKQAISDHRY DLQYILYSLA LHRYLAMRLP
NYDYDTHIGG CYYLFLRGMS VQYPGFGIYY DKPPKALILA LDALFQRSLE ATTDSNKKSD
AQLDTGAMA
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