| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1563 |
|---|
| Symbol | |
|---|
| ID | 4258155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1825016 |
|---|
| End bp | 1826584 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638122211 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_737618 |
|---|
| Protein GI | 114047068 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1288] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.150626 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTC CACCCTCGAC GGCTCAGCCA ACAGAAGCAG CTCAGACTGC TATGGCACCA
TCCGCTTCAC ACTCACCCTC ATCCTTTCAA ATGCCCGATA CCTTAGTGAT CATCTTTTTT
GTGGCATTAC TTGCGGGATT AATGACTTAC TTTATTCCGA TTGGGTCGTT TCAAACCCAA
GAGGTGCATT ATCTGGCCGA AGGTGTCGAT AAAGCGAGGA CAGTAGTCGA CCCTAATTCA
TTTGCCTATC AATTGGATGA TGCGGGCGAG CCTAAGCTGC AACCAGTGGC ACTGTTTAAA
GGCGAGGGCG GGGTTGGCTT TTTTAACTTC GCCTTTGAGG GCCTAACCTC GGGGTTTAAA
TGGGGCAGCG CGATTGGCGT GATCATGTTT ATGCTAGTGA TTGGTGGCTC CTTCGGGGTG
GTAATGGCCA CAGGCACCAT AGATAACGGC ATCTTAAAGT TAATCGATAA AACCCGTGGC
AATGAAAAGT TATTCATTCC GGTGATATTT ACCCTGTTTT CCCTCGGCGG CGCCGTATTT
GGCATGGGAG AAGAGGCCAT TGCCTTCGCG ATTATCATCT GCCCACTCAT GATCCGTTTA
GGGTACGACG GCATCACCAC TGTGATGGTG ACCTATGTGG CGACCCAAAT TGGTTTTGCC
AGTTCTTGGA TGAATCCCTT CAGTGTGGCA ATTGCCCAGG GCATTGCGGG GATCCCGGTT
CTTTCTGGCA GTGAATTTCG CTTCCCTATG TGGCTCGGAT TCACATTGCT TGGCATCGTT
TTTACCATGC GTTACGCCCA TCGCATTCAG CAGCAACCAA GTCTCTCCCA TAGCTATCAG
TCCGATGCTT ATTTCCGTGA GCACCATGCT AATACAAAGC TCGAGAGCCG CTTTAATCTT
GGGGATGTGT TGGTGCTGTT GTTGTTAGTA TTAACTATGG TGTGGGTGAT TTGGGGCGTT
GTGGCAAAAG CGTGGTTTAT CCCCGAGATC GCCAGTCAAT TTTTTACTAT GGGCATAGTG
GCCGGCGTTA TTGGCTGCGT GTTTAAGCTC AATGGCTTAA CGCTTAACAA GGTCGCGCAG
AGTTTTAAGG ATGGCGCTAA AACCATGTTA GAGCCAGCCC TTTTAGTGGG ATGCGCCTCA
GGGATTTTAC TGCTCCTTGG CGGCGGTACA CCGACTGAAC CGAGTGTGCT TAATTCGATT
CTGAACAGCG CTGGCGGGGT GATTGGCCAT CTGCCGGATG CGCTCTCGGC GTGGTTTATG
TTGTTGTTTC AATCCGTATT CAACTTTTTC GTGACCTCAG GTTCAGGGCA GGCCGCACTG
ACTATGCCAC TGATGGCACC TCTCTCTGAC ATTGTTGGTG TGACGCGCCA AGTGGCGGTA
TTGGCCTTTC AACTAGGCGA TGGCCTCACC AATATCATAG TGCCCACCTC AGCATCTTTA
ATGGCAACCC TTGGCGTATG CCGCGTCGAT TGGGGCAACT GGCTGAAATT TGTCTGGCGT
TTTATGTTGC TGCTGATGTT GGTCTCAAGC GTGCTGGTGA TTGGCGCGCA CTATCTTGGA
TTTAACTAG
|
|---|
| Protein sequence | MTTPPSTAQP TEAAQTAMAP SASHSPSSFQ MPDTLVIIFF VALLAGLMTY FIPIGSFQTQ
EVHYLAEGVD KARTVVDPNS FAYQLDDAGE PKLQPVALFK GEGGVGFFNF AFEGLTSGFK
WGSAIGVIMF MLVIGGSFGV VMATGTIDNG ILKLIDKTRG NEKLFIPVIF TLFSLGGAVF
GMGEEAIAFA IIICPLMIRL GYDGITTVMV TYVATQIGFA SSWMNPFSVA IAQGIAGIPV
LSGSEFRFPM WLGFTLLGIV FTMRYAHRIQ QQPSLSHSYQ SDAYFREHHA NTKLESRFNL
GDVLVLLLLV LTMVWVIWGV VAKAWFIPEI ASQFFTMGIV AGVIGCVFKL NGLTLNKVAQ
SFKDGAKTML EPALLVGCAS GILLLLGGGT PTEPSVLNSI LNSAGGVIGH LPDALSAWFM
LLFQSVFNFF VTSGSGQAAL TMPLMAPLSD IVGVTRQVAV LAFQLGDGLT NIIVPTSASL
MATLGVCRVD WGNWLKFVWR FMLLLMLVSS VLVIGAHYLG FN
|
|---|
| |