Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1428 |
Symbol | |
ID | 4258544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 1657454 |
End bp | 1658476 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638122062 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_737484 |
Protein GI | 114046934 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000272228 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.49264 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATTGA ATCAACAGAT GGGTATTACA CGTCCATTGA AAACCGTCGC AAAAATGCTG GCACTGGCCT CAGTGTTTGC GACCAGCTTT AACGTGTTTG CGGCGCCCGT TGAAATCAAG TTCTCCCACG TGGTTGCTGA AAACACGCCA AAGGGTCAAA TGGCGTTGAA GTTTAAAGAA TTAGTTGAAC AACGTTTACC TGGTGAATAT ACGGTCAGTG TATTCCCTAA CTCACAGTTA TTTGGGGATA ACAACGAGTT AGCGGCACTT CTGTTAAACG ACGTGCAATT TGTAGCGCCT TCTCTTTCTA AATTTGAGCG TTACACTAAG CGCCTACAGG TTTTCGACCT GCCATTCCTA TTCAATGACA TGGATGCTGT AAACCGTTTC CAACAAGGCG AAGCAGGTCA AGCATTGCTG AACTCAATGA ACCGTAAAGG GATTGTGGGT TTAGGTTATC TGCATAATGG TATGAAGCAG TTCTCTGCTA ACACACCACT CAAACAACCT TCTGATGCTA AAGGTTTAAA ATTCCGCGTG ATGGCATCTG ACGTATTAGC AGCCCAGTTT GATGCAGTTG GTGCTATCCC AGTGAAGAAA CCTTTCTCTG AAGTGTTCAC TCTGCTGCAA ACCCGTGCGA TTGACGGTCA AGAAAACACT TGGTCAAACA CCTACTCACA AAAATTCTAT GAAGTTCAAA GCCATATTAC CGAAAGTAAC CACGGCGTGT TGGACTACAT GGTCGTGACC TCTGACGCCT TCTGGAAAGG CTTACCCGCG GATAAACGTA AAGTGATCAA AGAAGCGTTA GATGAATCTA TCGCCTTAGG TAACAAGATC GCTGCTGAAA AAGATAACGA AGACAAGCAA TTAATCCTTG ATTCTAAACG TTCTCAACTG GTGACCTTAA CACCAGAAGA ACGTCAAAAA TGGATTGATG TAATGAAACC TGTTTGGGCG AAGTTTGAAG ACCAAGTAGG TAAAGATGTG ATTGAAGCCG CTGTTGCTGC AAATAAACAA TAA
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Protein sequence | MTLNQQMGIT RPLKTVAKML ALASVFATSF NVFAAPVEIK FSHVVAENTP KGQMALKFKE LVEQRLPGEY TVSVFPNSQL FGDNNELAAL LLNDVQFVAP SLSKFERYTK RLQVFDLPFL FNDMDAVNRF QQGEAGQALL NSMNRKGIVG LGYLHNGMKQ FSANTPLKQP SDAKGLKFRV MASDVLAAQF DAVGAIPVKK PFSEVFTLLQ TRAIDGQENT WSNTYSQKFY EVQSHITESN HGVLDYMVVT SDAFWKGLPA DKRKVIKEAL DESIALGNKI AAEKDNEDKQ LILDSKRSQL VTLTPEERQK WIDVMKPVWA KFEDQVGKDV IEAAVAANKQ
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