Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1266 |
Symbol | |
ID | 4258191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1474557 |
End bp | 1475669 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638121899 |
Product | twitching motility protein |
Protein accession | YP_737322 |
Protein GI | 114046772 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0126026 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGTCC GTCCGTTTTT AAAAGTCATG GTGGAGCGTA AAGCCTCGGA CTTGTTTATT ACCGCAGGGT TTCCGCCGAG CGCCAAAATC GATGGTGAGT TACGCCCGTT AGCTGAGAGT GCCTTTACGC CCGCGCAGTC TCTGGATTTT GTCGAGTCCG TGATGACCGA GGCACAAAAG AAGGAGTTTC ACACCACTCG CGAGTGTAAC TTTGCTTTTG CGGTTAAGGA TTTAGGTCGT TTCCGTGTTA GCGCATTCTG GCAGCGTGAA TCTCCGGGAT GCGTAATGCG CCGGATTGAG ACCAAGATCC CTGAGGTGGA AGACTTAAAA CTGCCACCGA TTTTAAAAGA TCTGGTGATG AGTAAACGTG GTCTTATCAT CATGGTTGGG GGAACGGGAA CCGGTAAGTC AACCTCCTTG GCGGCGTTAG TGGGTTATCG TAATGCCCAT GCCCGTGGTC ACATCCTCAC CATCGAAGAC CCAGTGGAAT TTGTGCACGA CCATCGCAAA AGCATCATCA CTCAACGCGA AGTGGGTATA GATACAGAAT CCTTTGATGC GGCGCTGAAG AGTTCGCTGC GTCAGGCGCC CGATGTGATT TTGATTGGTG AGATCCGTAC TCAAGAAACC ATGGAGTTTG CGCTTTCTTT CGCCGAAACG GGTCACCTCT GTATGGCGAC ACTGCATGCG AACAACGCTA ACCAAGCGTT AGACCGGATC ATGCACTTAG TGCCAGAGAG TAAACACCAG CAGTTGCTAT TCGACTTGTC ACTCAACCTG CGCGGCATTG TGGCGCAGCA ACTGGTGCCT AAAGTCGATG GCACAGGACG ACGGGCGGCG ATTGAAGTTT TGATCAATAC GCCACGTGTC GCGAGTTTGA TTGCTAAAAA CGAGCTGCAT TTGCTCAAAG AAACCATGGC CAAATCGAAT GAACAGGGCA TGCAAACCTT CGACCAAGCC TTGCTGCAAC TCTATATCGA TGGGGAAATC AGCTATGCCG ATGCGCTTCA TCATGCTGAC TCGCCAAACG ACTTACGTTT AATGATCAAA CTGCAAAATA AAGAACCTAC CAGTTCAAGC TTTATGGAAG GCGTGACCTT GGATATGGAT TAA
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Protein sequence | MDVRPFLKVM VERKASDLFI TAGFPPSAKI DGELRPLAES AFTPAQSLDF VESVMTEAQK KEFHTTRECN FAFAVKDLGR FRVSAFWQRE SPGCVMRRIE TKIPEVEDLK LPPILKDLVM SKRGLIIMVG GTGTGKSTSL AALVGYRNAH ARGHILTIED PVEFVHDHRK SIITQREVGI DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KVDGTGRRAA IEVLINTPRV ASLIAKNELH LLKETMAKSN EQGMQTFDQA LLQLYIDGEI SYADALHHAD SPNDLRLMIK LQNKEPTSSS FMEGVTLDMD
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