| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1265 |
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| Symbol | |
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| ID | 4258190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1473510 |
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| End bp | 1474547 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638121898 |
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| Product | pilus retraction ATPase PilT |
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| Protein accession | YP_737321 |
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| Protein GI | 114046771 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00395146 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATCA CTGAGTTATT AGCCTTTAGT GTAAAACACA AAGCCTCGGA TCTACACCTC
TCTGCAGGGA TATCTCCCAT GATCCGTGTC GACGGTGAAG TGAGAAAAAT TAACCTGCCC
GCGCTCGATC ATCAGGGTGT ACACAGCCTT GTGTACGACA TTATGAATGA TAAACAGCGT
AAGGACTTTG AAGAGCATTT AGAAATCGAC TTTTCGTTCG AAGTCCCTAA TTTAGCGCGT
TTCCGTGTGA ACGCCTTTAA CCAATCCCGC GGTGCGGCGG CGGTGTTTCG TACCATTCCT
AGCGAAATTT TGTCGCTCGA GCAGTTAGGG GCGCCAGAGA TTTTTAAGAA AATTTCCAGC
TTTCCCCGCG GCTTAGTGCT TGTTACTGGG CCTACAGGTT CGGGTAAGAG TACCACACTT
GCGGCCATGG TGGATTACAT CAATGAGAAC CGCCACGACC ATATCTTAAC CATTGAAGAT
CCTATCGAAT TCGTACATCA GAATAAGCAA TGTTTGATTA ACCAACGGGA AGTGCATCGT
CATACCCACA GTTTTAACGC GGCGCTGCGT AGCGCACTGC GTGAAGACCC TGACGTAATC
CTCGTCGGTG AGATGCGTGA CCTTGAAACC ATTCGTCTGG CGATGACGGC GGCCGAAACG
GGTCACTTAG TCTTTGGTAC CTTGCACACC ACCTCGGCGG CGAAGACCAT CGACCGTGTG
GTTGACGTTT TCCCAGCCGG TGAAAAGGAC ATGGTGCGTA CCATGTTGTC TGAATCATTA
CAGGCGGTTA TTTCGCAAAC CCTGATTAAG AAAATTGGTG GCGGCCGTGT GGCTGCCCAC
GAAATCATGA TGGGTACGCC CGCTATTCGT AACCTTATCC GTGAAGATAA AGTGGCGCAG
ATGTACTCAG CCATTCAAAC GGGGATGGCC CATGGCATGC AAACGCTCGA ACAGTGTCTG
CAAAACTTAG TGAACCGTGG TCTCATCACC CGTGAGGATG CCATGGCGAA GAGCTCAAAC
AAACAAGCGA CGTTTTAA
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| Protein sequence | MEITELLAFS VKHKASDLHL SAGISPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR
KDFEEHLEID FSFEVPNLAR FRVNAFNQSR GAAAVFRTIP SEILSLEQLG APEIFKKISS
FPRGLVLVTG PTGSGKSTTL AAMVDYINEN RHDHILTIED PIEFVHQNKQ CLINQREVHR
HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV
VDVFPAGEKD MVRTMLSESL QAVISQTLIK KIGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSAIQTGMA HGMQTLEQCL QNLVNRGLIT REDAMAKSSN KQATF
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