Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1198 |
Symbol | alaS |
ID | 4256448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1399445 |
End bp | 1402069 |
Gene Length | 2625 bp |
Protein Length | 874 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638121819 |
Product | alanyl-tRNA synthetase |
Protein accession | YP_737254 |
Protein GI | 114046704 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.400961 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATCAAA CGACAGCAGC GCTTAGAAGT GCTTTCCTCG AATTTTTCCG CAGCAATGGT CACCAAGTTG TGGATAGTAG TTCTCTTGTA CCAGGCAACG ATCCCACGCT TTTATTCACC AACGCCGGTA TGAACCAGTT CAAGGACGTG TTTCTTGGCA TGGACAAACG TAGCTATACA CGTGCGACCA CTGCCCAACG CTGCGTCCGT GCGGGTGGTA AACACAACGA TTTAGATAAC GTTGGTTACA CCGCGCGTCA CCATACTTTC TTCGAAATGC TGGGCAACTT CAGCTTTGGT GATTATTTCA AAGAAGATGC GATTCGTTTT GGTTGGACAT TCCTGACTGA AGTCTTGAAG CTACCAAAGG AACGTCTGTG TGTAACTGTT TACCAAACAG ACGATGAAGC CTTTGAAATT TGGAATAAAA AGATTGGTGT TGCTGCCGAA AACATCATTC GCATCGGCGA TAACAAGGGC GCGCCATACG CTTCAGATAA CTTCTGGCAA ATGGGTGACA CTGGTCCTTG TGGTCCTTGT ACCGAAATTT TCTACGATCA CGGCGATCAT ATCTGGGGCG GACGTCCTGG TAGCCCAGAA GAAGATGGCG ACCGTTTCAT CGAAATCTGG AACATCGTAT TCATGCAATA CAATCGCCAA GCCTCTGGTG AAATGTTGCC GCTGCCAAAA CCTTCAGTCG ATACTGGTAT GGGGATTGAG CGTATCGCTG CGATTATGCA GGGCGTTCAT TCAAACTACG AAATCGATAT TTTCCGCGCC TTGATTGCGA AAGCAGCCGA AATCATCGGC GTGACTGACT TATCTAACAA GTCACTGCGC GTTATTGCCG ACCATATCCG TTCATGCGCC TTCTTAGTTG CCGATGGTGT AATGCCATCG AACGAAGGTC GTGGCTATGT ACTGCGTCGT ATTATTCGCC GCGCCGTGCG TCATGGTAAC AAGTTAGGGG CAACTGAAGC CTTCTTCTAC AAGTTAGTTC CGACGCTAAT CGAAGTGATG GGCGATGCCG CTAAAGGTCT TGCTGATACT CAAGTGATTG TTGAAAAAGC CCTTAAGGCG GAAGAAGAAC AGTTTGCCCG TACGCTTGAG CGTGGTTTAG GCATTCTAGA TAGTGCGTTA AACGAATTGC AGGGCGATAC CTTAGACGGT GAAACTGTCT TTAAACTTTA CGATACCTAT GGCTTCCCAG TGGATTTAAC CGCCGACGTA TGCCGTGAGC GCAACATTAT CGTCGATGAA GCGGGCTTCG AAGCGGCGAT GGCTGAACAA CGTAGCCGCG CTCAAGCCGC GGGTAACTTC GGCGCCGATT ACAACGCTGC ACTGAAAATT GATGCTGAAA CCGCATTCTG TGGTTACTCA GAACTCACAG GCAATGCCAA AGTCACTGCA CTTTACCTAA ACGGTGAGTC AGTTCCTGCA ATCAATGCGG GTGATGATGC CGTAGTCGTG CTCGACGTGA CGCCATTCTA CGCCGAATCG GGCGGCCAAG TCGGCGACAA GGGCGTATTA GTGGCTCAAG GTATCGAGTT CGCTGTTAGC GATACGCAAA AGTTTGGTCA AGCCTCAGGC CACAAAGGGA CGTTAACGGC TGGCAGCCTA AGCGTTGGCC AAGTACTTGA GGCAAAAGTG GATAAGAAAC TGCGTCACCG CACCCAGTTA AACCACTCAG TGACTCACTT ATTACATGCT GCGCTGCGTC AAGTGTTAGG TACTCACGTT ACTCAAAAAG GTTCACTAGT TGATCCTGAG CGTTTACGTT TCGACTTCTC TCATTTCGAA GCGGTCAAAC CTGCTGAATT GAAACAGGTT GAAGAGTTAG TCAACACCCA AATTCGTCGT AACCATGAGC TGAAAGTCGC TGAAATGGCG ATTGATGAAG CCAAAGAAAA AGGCGCTATG GCGCTCTTTG GTGAGAAGTA CGATGCGCAA GTGCGTGTCG TCACTATGGG CGATTTCTCT ATCGAACTGT GTGGTGGTAC TCACGTTGGT CGTACCGGTG ACATTGGTCT GTTCAAAATT ACCTCTGAAG GCGGTATCGC TGCGGGCGTT CGCCGTATCG AAGCGGTAAC CGGTGCGGCA GCGATGGCCT ATGTGGCACA GCAACAAGCG CAACTTGAAG AAGCAGCTGC TCTGCTTAAA GGCGATACTC AATCTGTTGT GGCTAAGCTG AAAGTGCAAC TGGATAAAAT GAAGCAACTT GAAAAAGACA TGCAGCAACT AAAAGATAAG TTAGCTGCGG CCGCGAGTGC GGATTTAGCC GGTGATGCCG TTGTGGTTAA TGGCGTAAAT GTGCTGATTA AGAAGCTTGA AGGCGTTGAA GCAGGTGCAC TGCGTGGACT GCAAGATGAG TTGAAGCAAA AGCTGAAATC CGCCGTTATC CTGCTCGGTG TGGCTCAAGA AGGTAAAGTG AACCTTATCG CGGGTGTGAG CAACGACTTA GTCGGTAAAG TTAAAGCCGG TGAACTGGTT GCTATGGTTG CTGCGCAGGT GGGTGGTAAA GGCGGTGGTC GCCCTGATAT GGCTCAAGCG GGTGGTAGCC AACCAGAAAA TCTGGATGCG GCACTGTCTC AAGTATTACC TTGGATTACT GAGCGTTTAG CTTAA
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Protein sequence | MYQTTAALRS AFLEFFRSNG HQVVDSSSLV PGNDPTLLFT NAGMNQFKDV FLGMDKRSYT RATTAQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKEDAIRF GWTFLTEVLK LPKERLCVTV YQTDDEAFEI WNKKIGVAAE NIIRIGDNKG APYASDNFWQ MGDTGPCGPC TEIFYDHGDH IWGGRPGSPE EDGDRFIEIW NIVFMQYNRQ ASGEMLPLPK PSVDTGMGIE RIAAIMQGVH SNYEIDIFRA LIAKAAEIIG VTDLSNKSLR VIADHIRSCA FLVADGVMPS NEGRGYVLRR IIRRAVRHGN KLGATEAFFY KLVPTLIEVM GDAAKGLADT QVIVEKALKA EEEQFARTLE RGLGILDSAL NELQGDTLDG ETVFKLYDTY GFPVDLTADV CRERNIIVDE AGFEAAMAEQ RSRAQAAGNF GADYNAALKI DAETAFCGYS ELTGNAKVTA LYLNGESVPA INAGDDAVVV LDVTPFYAES GGQVGDKGVL VAQGIEFAVS DTQKFGQASG HKGTLTAGSL SVGQVLEAKV DKKLRHRTQL NHSVTHLLHA ALRQVLGTHV TQKGSLVDPE RLRFDFSHFE AVKPAELKQV EELVNTQIRR NHELKVAEMA IDEAKEKGAM ALFGEKYDAQ VRVVTMGDFS IELCGGTHVG RTGDIGLFKI TSEGGIAAGV RRIEAVTGAA AMAYVAQQQA QLEEAAALLK GDTQSVVAKL KVQLDKMKQL EKDMQQLKDK LAAAASADLA GDAVVVNGVN VLIKKLEGVE AGALRGLQDE LKQKLKSAVI LLGVAQEGKV NLIAGVSNDL VGKVKAGELV AMVAAQVGGK GGGRPDMAQA GGSQPENLDA ALSQVLPWIT ERLA
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