Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1153 |
Symbol | |
ID | 4257798 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1341387 |
End bp | 1345058 |
Gene Length | 3672 bp |
Protein Length | 1223 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638121774 |
Product | type IV pilin biogenesis protein, putative |
Protein accession | YP_737209 |
Protein GI | 114046659 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.591357 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATTTCGT GTTTATTTAC ATATCAATTC GAAAATCGAT TGGTATTCTC TCTTGCTCGT ATTTCTTCGC TAATATCCCT TAACATTCGC CCACAAAACG TTCGTCATAC GTTAACGTCA CTGTTTTCTC TTATTCTGTC GAGTGTAATT GTGAGTGCGG CCAGTTTATT TATGGCGCCG ACTCACGCCG ATGACACTGA GCTTTATGTT TTCGAAGCGT CCGCCCGTAA TGGCTCGCGT CCGCAGGTGC TGATTATCTT TGATAACTCG GGCAGCATGA GTAATCTCGC CTATGATGTC GAGGCGCCCT ACGAGAATAA GCGCGCAGTA AATTATGCCC AATCGGGTAA TTTATTCTAT AGCCGAGGTT CATCGGAAAA CGCGGCTGCG CCCAATCCTA ATTCAGGGCG GGAAAAACGT AAGTTCAGTG GTGGACTCAA TGGCTGCGAA AGCTCATGGG AATATCTGAA TCGTTACGGC ACCTTTACGG GTTTTTTTAG GGAATATGGT TTTTCGGGAA GCTCGGGATC TTGGAGAGAG TTCTCAGAGC TTAACGGCAG TTCCATTTCC GCCGTCGATT GTTTTGAGGA TATTCAGGAA AACAAGTTCG GTAACGCGGC AGGTGAAGCC CAAGGTTTAC CCGTGGACAG CCTAGGGACG GCGAGCAAAC CGGTTCGTTA CACTGAGGCC AGTACTAGCT CATCAGACAA TGTAAAGTCC GCGGCCAAGG CTAAGGCGGA AAAAACCGCT TTTGGTACCG GTAAAGTGGT TACCGTCTAT ACCGAAGATT ACTTAAACTG GCTGCATGGT CCTAAAACCA GGGTCAATAA AACGCGACTA GCCTTGGCTA AAGATGCGAT TGAAAGTGTG ATTTTAACCA CGCCGGGTGT GGATTTTGGC CTAGCGATTT TTAATATGAA TGGCCCCTAT GATGGGCAGC GTGATGGCGG GCGGATTATC TCTGGGATTA AGCCTATGTC CGCTGCAGCT AAAATTGATT TGCTTAAAGG GGTTAATGAT ATTAACTACG CCCAAAATAC TCCCTTATGC GAAACCCTCT ATGAGGCGTA CCGTTATTTC GGCGGGCAGA GTCAGTATTT TGGTGATGAT GACAGCGATT ATGACTATTT CGACCGCTGG GGACGTTATT TGGGGACTTA CCAAGCGAGC AGAAACTCTT TTACCGATCC CGAAGCGTTA GTCGTGGGGA CCAATAACTA TAACTCGCCC TTCAAACGTT GCCAAAATGA AGCCTATATC ATCTATATCA CCGACGGTGA ACCCACGCTG GATAATGCGG CCGATGGTTT GGTTGAACAG TTAACCAAAG GTGTTGGAAA ACATACCTCT CGCCCCGTCA GCTACCTCAG TGCGCTTTCA GGCTGGATGA GAAACGAGGA CGTCAATCCT AATTCTGTTG GCAAACAAAC CGTTAGAACC TTTACCATCG GCTTTAGTGA AGGTGCCGCC AATGCCGAAC ATTTGCTTAA GCAAACCGCT GAAAATGGCG GAGGTAAGTA TTTCGATGCG ACCGATGCCA GTAAATTACG CTCTTCATTA CAAACGGCCT TGAACAATAT CCTCGAAAAA AATGCCAGCT TTACCTCTCC CTCGGTGGCA AGTAATAACT TTAACCGAAC GCAAACCTTT GACTCTGCTT ATTACTCTAT GTTTTTGCCG AACAAAGGAC CGAGATGGTT AGGCAATATT AAGAAATTCA AAGTCACCAG TAGTGGTGAT GTTGTCGATA GCAAAGGCAA CAATGCGATA GGCGAAGATG GCAACATCAA AGCCGAGGCC TGCTCCTATT GGACCTCGGC CGAAGAGTGC GGTGCGAGTG GCGATGGTAA CGATGTGAAG CGGGGAGGAG TGCTAGGTGC AATGCAGCAG GCGAGTAGTC GCACCTTGTA CAGTAATTTA GGCACGGGAT TAAGCCCGTT TACCCTGTCG AATGCATCTC GCAAAGCGGG GGGCGATGCA CGTTTGGCCT TGTATATGGG GGTCGATGAA ACTGAGCTTA GCGAGCATTT TGATTGGGCC AAGGGCATCG ATGTCGACAA TGACAAGAAT CAGGACCTCA GTGCCGCGAG TGGCGCAACC CCCAATTGGC GCGCCGATAT TATGGGGGAT GCTTTACATT CCAAACCCTT AGCACTTAAT TTTGGCTCTG AAGATCAGCC CGATATTCGG ATTATCGTGG GGACTAACCA TGGGGTCCTG CATATGTTCA AGGATGAAGG CGATAGCGTG TCTGAGACTT GGGGTTTTAT CCCCTATGAG TTGCTGCCGA ATTTTCGCGA TCTGAAGGCG AATGCGCCAA CGGGCGTACA CTCGGTATAC GGCATTGATG GCTCGCCAGT CGCTTACACC AAAATGCAGG GCAAACGTAT TGAAAAAGCG TGGGTCTTTG TGGGGATGCG CCGTGGGGGA AATGCTTATT ATGCCCTCGA TATCACCTCC CCCGATAATC CTACTTTTAT GTGGAGGATT GATGCCAGCT CACCGGGAAT GGGCGAGTTA GGTCAATCAT GGTCGACGCC AGTCGTCACC ACGATTCCGA GTGCCACTGG GGATAAACCC GTGCTGATCT TCGGTGCGGG ATATACCCCT GCGACCAAGG ATGGCGCCGA GATTGGCAGC GACGATAGCC GTGGCCGAGG CGTATTTATT ATCGATGCCG AAACGGGGGC GTTAATCCAT CAATTTGGTG GCAGTGGCGC AAACACTCAA TTGCCGGGGA TTGCCAACAG TATTCCAAGC AGCGTTGCCG TGTTAGACGG TAATGGCGAT GGCCGAACGG ATAGGATCTA TGCCACAGAC ACACAAGGGA ATGTGTGGCG AATGGACATG CCTACGGCAA ATACCTCGAC TTGGTCGGGA TTTAAATTTG CCGCATTAGG GGATAGGAGT TCGGTGGCAA GTGACAGACG ATTCTTCTCC GGCCCCACGG TCGCGCAGAC CATAATCACC AATACCTTCG AGTTGACTCA GGTGGTCAAC GGAAAATCGA CCAAGACAGT GACGACACAG AATATTCCCT ACGATGCCGT AGTGGTGGGC AGTGGTCACA GGGCAAAGCC TAGTGATGTG TCCCGTTCGG ATATGTTTTT TGCCTTGCAA GATAGGAACA TAGTGACTCA GTCATTCCAA GGTAAACCTA ATCAAAAGCC TGTGCCGAGC GCCTTAACCT TAAGTGACTT ATACGATGTG ACTACGGCGG CGCCAAGCAA CCAAGCTAGC GAAATTGCTT TTGGTCAAAA ACGGGGTTGG TACTATGACT TCTCCCGTAA AGGTGAAAAG AGTCTATCGT CTGCGACCAT AGTTCAGGGC GAAGTGTATT TCACCAGTTT TGTGCCTGGT AGTGATGCTT CGGTGAACCA ATGTTTAAGT TCGGGGAAGG GCTACCTCTA TAAAAAGAAT TTACACAAAG GTACGAATGG CTACAGAACC GATTTCTTAT ATGCCGGTGA ACTGGTTTTG GATACGCCGC AATTGGTCAT CCCCCCGGCT GCACAGCCCG ATGACCCCAA TGCTAAGGCT CCCACTCCTG ATATGTTTTT GATTGGGATT GGTAAGGCAG TGCCTGAGGA GGCGACTTGT GAGAGTGGTA ATCCTAAGTG TATTGGCAGT GGGCCTAAGG CAAACAAGAT TTACTACTAC GTAGATCAAT GA
|
Protein sequence | MISCLFTYQF ENRLVFSLAR ISSLISLNIR PQNVRHTLTS LFSLILSSVI VSAASLFMAP THADDTELYV FEASARNGSR PQVLIIFDNS GSMSNLAYDV EAPYENKRAV NYAQSGNLFY SRGSSENAAA PNPNSGREKR KFSGGLNGCE SSWEYLNRYG TFTGFFREYG FSGSSGSWRE FSELNGSSIS AVDCFEDIQE NKFGNAAGEA QGLPVDSLGT ASKPVRYTEA STSSSDNVKS AAKAKAEKTA FGTGKVVTVY TEDYLNWLHG PKTRVNKTRL ALAKDAIESV ILTTPGVDFG LAIFNMNGPY DGQRDGGRII SGIKPMSAAA KIDLLKGVND INYAQNTPLC ETLYEAYRYF GGQSQYFGDD DSDYDYFDRW GRYLGTYQAS RNSFTDPEAL VVGTNNYNSP FKRCQNEAYI IYITDGEPTL DNAADGLVEQ LTKGVGKHTS RPVSYLSALS GWMRNEDVNP NSVGKQTVRT FTIGFSEGAA NAEHLLKQTA ENGGGKYFDA TDASKLRSSL QTALNNILEK NASFTSPSVA SNNFNRTQTF DSAYYSMFLP NKGPRWLGNI KKFKVTSSGD VVDSKGNNAI GEDGNIKAEA CSYWTSAEEC GASGDGNDVK RGGVLGAMQQ ASSRTLYSNL GTGLSPFTLS NASRKAGGDA RLALYMGVDE TELSEHFDWA KGIDVDNDKN QDLSAASGAT PNWRADIMGD ALHSKPLALN FGSEDQPDIR IIVGTNHGVL HMFKDEGDSV SETWGFIPYE LLPNFRDLKA NAPTGVHSVY GIDGSPVAYT KMQGKRIEKA WVFVGMRRGG NAYYALDITS PDNPTFMWRI DASSPGMGEL GQSWSTPVVT TIPSATGDKP VLIFGAGYTP ATKDGAEIGS DDSRGRGVFI IDAETGALIH QFGGSGANTQ LPGIANSIPS SVAVLDGNGD GRTDRIYATD TQGNVWRMDM PTANTSTWSG FKFAALGDRS SVASDRRFFS GPTVAQTIIT NTFELTQVVN GKSTKTVTTQ NIPYDAVVVG SGHRAKPSDV SRSDMFFALQ DRNIVTQSFQ GKPNQKPVPS ALTLSDLYDV TTAAPSNQAS EIAFGQKRGW YYDFSRKGEK SLSSATIVQG EVYFTSFVPG SDASVNQCLS SGKGYLYKKN LHKGTNGYRT DFLYAGELVL DTPQLVIPPA AQPDDPNAKA PTPDMFLIGI GKAVPEEATC ESGNPKCIGS GPKANKIYYY VDQ
|
| |