| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1145 |
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| Symbol | |
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| ID | 4257790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1327409 |
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| End bp | 1328647 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638121766 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_737201 |
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| Protein GI | 114046651 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00324803 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTA ACCAACCTTT ACGGATATTG ATGTTGACTG CCGTGGCGGC GTTTGTCCTT
TCGGCCTGTG GTGAACCCGA AGCCCAGCAG GGACAAGCAC CGGGGGCACC TAAGGTCGAT
GTCGCGCAGG TATTGCATGA GCGCGTTACC GAGTGGGATG AATTTACTGG CCGTTTGCAG
GCGCCAGAGA GTGTGACCTT AGTGCCACGC GTGTCTGGCT ATATCGCCTC GGTCAACTTT
AAAGAAGGCG CCTTAGTGAA GAAAGGCGAT GTGCTATTCC ATATCGATGC GAGTGTGTTC
GAAGCGGAAG TGGCCCGGTT AAAAGCAGAT CTTGCTAGCG CGCTCTCTGC TGAGCAACTG
GCCACTAACG ACTTAGAACG TGCCCGCAAA CTCTTTGCCC AAAAGGCGGT ATCTGCAGAA
TTACTCGATA CCCGCGAGTC TAACAAACGC CAAACCACGG CGGCCGTAGC CTCTGTAAAA
GCGGCGCTGC TGCGCGCCGA GCTGGACTTA GATTACACCC AAGTACGTGC ACCGATTGAT
GGCCGAGCCT CCTACGCCAA TGTCACCGCG GGTAACTATG TGTCAGCGGG GCAGAGTGTA
TTAACCAGCT TAGTGTCGAC CGCCAGCATG TATGCCTACT TCGATGTGGA TGAGCAAACC
TACCTGAAAT ACGTCAAGTT AACCGCCGAG AAAAAGCGTA AAGACCCTCG TGCTGGCGAC
AATCCCGTGT ATATGGCGCT GGCTAACGAA CGCGAATATC AACACATAGG CCTAGTGGAC
TTTGTCGATA ACTCGATGGA CAGACAGACG GGCACTATTC GAGTACGCGC CACGTTTAGC
AATGAAGACA ACAGCTTGCT CCCTGGTCTG TTCGCCAGAT TACGTACCGC TGGTAGCGGC
GCCTACGACG GCATCTTAAT TGACGATAAA GCCGTGGGCA CAGATCTGAA CAACAAGTTT
GTCTTAGTGG TGGCAAACGA TGGCACCGTG GAGTATCGCG GCGTCACCCT AGGTGAAAAA
GTTCAAGGTT TACGCATTGT TAAGCAAGGT TTAGCGGCAG ACGACAAAAT CGTCGTCAAT
GGCATGCAAA GGGTTCGTCC TAAGATGCAA ATTGAGCCGC ACCTGGTTGA TATGGCCGAC
AGCGAACAGT TAGAGACGCT TCGTCAAGCT CAATTACTGC TTGATAAACA TCAAGAAAAT
ATCACTACCC CAGACGTTGA AGTAGCGAGC CGCGGTTAA
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| Protein sequence | MKSNQPLRIL MLTAVAAFVL SACGEPEAQQ GQAPGAPKVD VAQVLHERVT EWDEFTGRLQ
APESVTLVPR VSGYIASVNF KEGALVKKGD VLFHIDASVF EAEVARLKAD LASALSAEQL
ATNDLERARK LFAQKAVSAE LLDTRESNKR QTTAAVASVK AALLRAELDL DYTQVRAPID
GRASYANVTA GNYVSAGQSV LTSLVSTASM YAYFDVDEQT YLKYVKLTAE KKRKDPRAGD
NPVYMALANE REYQHIGLVD FVDNSMDRQT GTIRVRATFS NEDNSLLPGL FARLRTAGSG
AYDGILIDDK AVGTDLNNKF VLVVANDGTV EYRGVTLGEK VQGLRIVKQG LAADDKIVVN
GMQRVRPKMQ IEPHLVDMAD SEQLETLRQA QLLLDKHQEN ITTPDVEVAS RG
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