| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1113 |
|---|
| Symbol | |
|---|
| ID | 4258755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1285890 |
|---|
| End bp | 1286957 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638121734 |
|---|
| Product | TMAO reductase system periplasmic protein TorT |
|---|
| Protein accession | YP_737169 |
|---|
| Protein GI | 114046619 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02955] TMAO reductase system periplasmic protein TorT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAT TTTGGCAAGC TTTGCTCACA CTCACCACTT TTGGCCTGTC ATGTTTATCT
GCAGCTGGCG CCAACAGCCA AACTTGGCCA TTGGAGCAAC GCCATCCCTT TAATGCCAAG
ATTCAACAGG CGCAGGCACT CGATTATCAT CCCCTGAGTA AAGCACAACA GGCTTGGCGC
ATTTGTGCCT TAGTCCCCCA CCTGAAGGAT GCCTATTGGA TTGGCATCGA CTACGGCCTG
ATCCAACAGG CGAAACACCT CGGTGTGTCG CTGGATCTGT TCGAAGCGGG CAGCTACTAC
CATCAAGATA AACAGCTCGA GCAATTAAGC GCCTGCATGA AGGGAGATTA CGACGCGATT
TTGCTTGGCG CCGTGAGCCC TAATCTACTC GAACAGTTTT TTGAGCCGTT AACTAAACCC
GTGCTCGCCC TAGTGAATAA GCTCAATGCT GAGCAAGTGC AGACCCATAT CGGCGTTAAC
TGGTATCAAA TGGGCCTCAG CGCGGGCAAT TTTATTAAGG CGGATGCCAA GGCACATACG
CCCACCCAGC CGACCACCTT GGCCCTCTTA GCGGGCCCTG AAAACCTCGG TGGCACAGAT
TTAGTCGAAC AAGGCATTCG CCATGCACTC GAGGGCAGCA ATGTCAGCAT CAGTGCGATT
CAGCATGCCG ATAACAATCG CAATCTCTAC CGCGATCAAT TACAGATTCT GCTAAAAGCC
CAGCGCCCCA ACTATATTCT CGGCAGTGCG GTGGCGATAG AAGCCGCCGT TAGTACCCTC
AAACAAAAGC AGCTGACGCA AGACATCAAG CTGGTGAGCA GTTACTTATC CCCCGCGATT
CTGCGCGGCT TAAAACGACA AAAAGTGGTC TACAGCAATG ATGACTTGGT CGTGTTACAG
GGCAAACTCG CTATCGATGT CACGGTAAAA CAGCTCGAAG GCGCTGCGCC TTTTGGCGAT
ATAGGTCCAG CTATCGTTGA GCGCACGACC TCACAAAATA CCTTATCGGA TCTTAGCTTT
AGTCTCGCCG AAGCGGATTT TTATCCCCTG TATCAAGTGC GCCCCTAA
|
|---|
| Protein sequence | MGKFWQALLT LTTFGLSCLS AAGANSQTWP LEQRHPFNAK IQQAQALDYH PLSKAQQAWR
ICALVPHLKD AYWIGIDYGL IQQAKHLGVS LDLFEAGSYY HQDKQLEQLS ACMKGDYDAI
LLGAVSPNLL EQFFEPLTKP VLALVNKLNA EQVQTHIGVN WYQMGLSAGN FIKADAKAHT
PTQPTTLALL AGPENLGGTD LVEQGIRHAL EGSNVSISAI QHADNNRNLY RDQLQILLKA
QRPNYILGSA VAIEAAVSTL KQKQLTQDIK LVSSYLSPAI LRGLKRQKVV YSNDDLVVLQ
GKLAIDVTVK QLEGAAPFGD IGPAIVERTT SQNTLSDLSF SLAEADFYPL YQVRP
|
|---|
| |