Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0988 |
Symbol | |
ID | 4255288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1138526 |
End bp | 1140721 |
Gene Length | 2196 bp |
Protein Length | 731 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638121599 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_737044 |
Protein GI | 114046494 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00021194 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.772446 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTATGC GTTTTAATCT ACTTCCACTT GCTGCTGCAG TAACCCTAGC TTTGAATCCT TTGGCGCTGA TGGCCGAAGA ACAAACCGCT TCAACAACAG AGACACAAGA TCAAAATATC GAAAAAATCA CTGTGATGGG TAAATACACA GTGAGTCGTA ATATTGATAC CGCAACGGGG TTAGGACTCA CGTTGCGGGA AACGCCACAG TCGGTCAGCA TTATGACGGC GGATCGGATT GAAGATCAGG CGCTAAATAC CGTGGTCGAT GTGGTCAACA ACACTGTGGG TTTATCATCT TCAAAAACCG ATAACGTGCG TAACGGTTTT TCGGCTCGCG GTTTTACCGT GCAAAACTAT CAAATTGATG GCGTGCCTTT ATCTTGGAGT TTAGGTGGTG ATGCCGGTGA AACGGTATCG GATGTGTCTA TCTACGAGCG CGTTGAAGTC GTGCGTGGTG CTACCGGATT ATTAACAGGT GCTGGCGATC CTTCGGCCTC AATTAACTTA GTGCGTAAGC ATGCCGACAG TTCTGATCTT AAAGGTTATG TCGATGTTGC CACTGGAAGT TGGGATAAAA AACAAGTCAC CGCGGATGTG TCTAATGGTC TGAATGAAGA CGGCAGCGTG CGTGGGCGCT TGGTCGCTAA GTATGTGAAT AGCGATTCTT ACCAAGATCT GTATCAAGAC CGCAAAACCA TTCTCTATGG TGTGGTCGAC AGTGATATTA CGGCCAACAC CTTGCTGCGT GTTGGTGGTA GCTATAACCA CAACGATCCC AAAGGGGCGA TGTGGGGCGC GTTGCCCGCC GTCTTTAGTG ATGGTTCTGC CACAGATTGG GATACATCGG CCACCACTGC CGCCGATTGG AGCCGCTGGG AAACCAAAAA CATCAACTAC TTTGCGAACC TTAATCACTA CTTCAGCAAT GGTTGGCAGC TCGTCGCTAA CTACAACCGC ATGGGGTATG AGACCACTAC TAAGATGATA TACATGTCGG GTATGCTCGA TAAAGACACG GGGGCGGGAC TCAGTGGACA GCGTTATCAC AGCCATGGCG AAAGTAACTC GAATAACTTT GATGTGCAGC TTAAAGGCGA CTATGACCTC TTTGGCCAAA CCCATGAGTT TGTGACGGGC GCTATGTATA GTAAGCAAAA ATCCTACGCC GATACCTACG AGCCTATCCG TGACGATATG ACGGGTTGGG ACTCACAAGT GGTGGATAAC TTCTACGAAT GGCAACAAAA TCAGTTTGCT GAGCCAGAGT GGTCGAGCAA CGCGAACCGT CAGCTCAATA TGGATACCGA GCAAAAAGGC TTTTATGCGG CGACTCGCTT AACGATTACC GATGATTTTA AATTGATTGC TGGTGGACGT ATCTCAAGCT GGAATCGTGA AGGCGTGAGC TATGGTACCG ATACTAACTT TGGTGATGAT GGGGTGTTTG TGCCCTACGT TGGCGCCTTG TACGATATCA ATGACGCGCA CCGTATTTAC GCCAGTTATA CCGGGATTTT TAACCCGCAG AATAAACAGG ATGCTAGTGG CGATTATCTT GACCCATTAG AGGGGAAAGC ATATGAGATT GGATTAAAAA GTGCGTATTT AGATGACCGT CTACATACAT CGTTAGCATT GTTTAAAATC GAGCAGGATA ACTTTGGTAA ACAAGATCCG GACTTTGTAC CGACTGAAGA GCAAATCGCC AACGGCCAAA CGACCGCATA CTATGCTATC CAAGGTACGG AAAGTAAGGG CTTCGAGTTA GAAGTTGTTG GGGAGTTTAT CGACGGTTGG AATATTTCAG CGGGCTATTC ACAATTTAAA GCCGAAGATG CTGAAGGAAA TAAGTTGGAT ACAACCAGTC CACGTAAGCA ATTTAAACTG TTTACTACCT ATCAATTTGT GGATCTATTG CCAGAGTTAA CCATTGGTGG TGGAGTGAAT TGGCAAAGTG ATAGTTATTC TACAGGTGGC AATGTCACTA TCACGCAGGA TGCCTATTCT TTGGTGAATC TAATGGCGCG CTACGATCTG GCTGAAAATA TGGATTTGCA GTTTAACCTC GAGAATCTGC TGGATGAGAA ATATTACGCC TATATGTCAA CCTCTAGTTA TTTGCCGGAA GCTTACAGCG TGTATCACTA CGGCGCGCCA CGTAACTTTA CCGTCAGCTT TAACTATCGT TTTTAA
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Protein sequence | MTMRFNLLPL AAAVTLALNP LALMAEEQTA STTETQDQNI EKITVMGKYT VSRNIDTATG LGLTLRETPQ SVSIMTADRI EDQALNTVVD VVNNTVGLSS SKTDNVRNGF SARGFTVQNY QIDGVPLSWS LGGDAGETVS DVSIYERVEV VRGATGLLTG AGDPSASINL VRKHADSSDL KGYVDVATGS WDKKQVTADV SNGLNEDGSV RGRLVAKYVN SDSYQDLYQD RKTILYGVVD SDITANTLLR VGGSYNHNDP KGAMWGALPA VFSDGSATDW DTSATTAADW SRWETKNINY FANLNHYFSN GWQLVANYNR MGYETTTKMI YMSGMLDKDT GAGLSGQRYH SHGESNSNNF DVQLKGDYDL FGQTHEFVTG AMYSKQKSYA DTYEPIRDDM TGWDSQVVDN FYEWQQNQFA EPEWSSNANR QLNMDTEQKG FYAATRLTIT DDFKLIAGGR ISSWNREGVS YGTDTNFGDD GVFVPYVGAL YDINDAHRIY ASYTGIFNPQ NKQDASGDYL DPLEGKAYEI GLKSAYLDDR LHTSLALFKI EQDNFGKQDP DFVPTEEQIA NGQTTAYYAI QGTESKGFEL EVVGEFIDGW NISAGYSQFK AEDAEGNKLD TTSPRKQFKL FTTYQFVDLL PELTIGGGVN WQSDSYSTGG NVTITQDAYS LVNLMARYDL AENMDLQFNL ENLLDEKYYA YMSTSSYLPE AYSVYHYGAP RNFTVSFNYR F
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