Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0860 |
Symbol | |
ID | 4257121 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 978712 |
End bp | 980445 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638121471 |
Product | spermidine synthase |
Protein accession | YP_736916 |
Protein GI | 114046366 |
COG category | [R] General function prediction only |
COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.801712 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACGAAT CCCAAATAAC CAGCTCTGCG ACTCAAACGG TAAAAACGAG TCGCCTAAGC TGGTTCGACG ATGTCCTACT ATTGGGTATT ATGGCCGTAC TCGCTGGGTG CGGCCTGATC TACGAATACC TGTTGTCCCA CTACGCAGGC CGGATCTTAG GCGCGTTAGA AGCCGCCATT TACACTATGA TCGGCCTGAT GATCGTCTCC ATGGGTCTTG GTGCCTTTGC CGCTCGCAAA ATTAAAGATG CCTTTACTGG CTTTGTGGTG CTCGAACTCA CGGTCGCGCT CTGCGGCTCG CTGGCGATTT TAATTACCGC AGCCGTAATA GGTTTTGGTC AGCAGCTGCC GATGCTTATC GCCTCCACCT TAGGCTTACC ACCGGATCAA CTACCCGAGG GTGGCATGAT TGGCTCACTG CAAAAGCTGA GCGAATATTT ACCCTATGTC TGGGGCGTGC TGCTCGGCTT GATGATCGGG ATGGAAATTC CACTGATCGC GAGGGTGAGG CAATCTCTAT CAGATGAACA CTTACTGCAT AATGCCGGTA CCATTTATGG CGCCGACTAT ATTGGCGCAG GGATTGGCGC GGCCATTTGG GTCGGCTTTA TGCTGGCCAT CGATATTCAA CTCGCTGCCG CGCTGACCGC CAGCTTTAAC TTGCTCGCCG GCTTTGTGTT TATCTGGCGT TTTTGGCCCA AGATCCAAAG GGCGAAATTA TTGCTCGCAG GGCATTTTGT GGTCACGGGC GTATTATTGC TGCTCGCCAT TCAAGGGCCG AGTTGGGAGC TGCAGTTCAA CAATCTGCTC TATAAAGACA AAGTGGTTTA CGCTAAGGCC ACGCGTTTTC AACAACTCAC CTTTACCGAG CGCTTACGCG GCAATGGCCT CTCCCCCATA TACTCTTTGT ATATCAATGG CCGATTACAG TTTTCGAGTA TCGATGAGCA TATCTACCAT GCGTTTTTAG TTCACCCAAC GCTTGCGGCC AGCGCTCGCC ACAACAAAGT TTTAATCATT GGTGGTGGTG ATGGACTGGG CCTAAAGCAA GTGCTGCGTT GGGAGCCTGA GCAAGTGACC TTGCTCGATC TTGATGCCGC ATTGGTGCAA CTCTTTAAAA CGCCCGATAC GGATATGCCT AAGCGTCTAA GCCAAGCCCT GTTAGCCCTC AATGGCAATG CCTTTAACGA TCCTCGCGTT AAGGTGATCC ACGACGACGC CTTTAACGGA GTCGATAAAT TGATTGCCGC AGGAGATAAA TACGATGCCA TTATTGTGGA CTTGCCCGAT CCTAGCCATC CCGATTTAAA TAAGCTCTAT TCGGATTATT TCTATCGCAA GCTCAAGGAA CTAATGAGCA GTGATGGCGC TCTGACTGTA CAGTCAACCT CGCCCTATCA CGCGCAAAAG GCCTTTATCT CGGTCGCGAA AACCTTAGCT TTAGCGGGGT TTGACGTAAA ACAGTATCAC CATAACGTCC CAAGCTTTGG AGAATGGGGC TGGAGCATTG CCACCCTATC GGGAAAAGAT GCCCAGCATC GCCTTGGCGA GCTGACAACA CTACCGATAG CGGATGACTG GTTAACCTTA GGTTTAGTCA AAGGCGCCTT TGAATTTCCT GCCAATTTTT ATCAGGACGC CGCAAGTATT AAGCCTAACG AACTGGGTTC GTTGCAGTTG TACCATTATC ATCAACAGGC ATGGTCCGAA ACCCAAGGAC TGGATCTTTT TTAA
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Protein sequence | MHESQITSSA TQTVKTSRLS WFDDVLLLGI MAVLAGCGLI YEYLLSHYAG RILGALEAAI YTMIGLMIVS MGLGAFAARK IKDAFTGFVV LELTVALCGS LAILITAAVI GFGQQLPMLI ASTLGLPPDQ LPEGGMIGSL QKLSEYLPYV WGVLLGLMIG MEIPLIARVR QSLSDEHLLH NAGTIYGADY IGAGIGAAIW VGFMLAIDIQ LAAALTASFN LLAGFVFIWR FWPKIQRAKL LLAGHFVVTG VLLLLAIQGP SWELQFNNLL YKDKVVYAKA TRFQQLTFTE RLRGNGLSPI YSLYINGRLQ FSSIDEHIYH AFLVHPTLAA SARHNKVLII GGGDGLGLKQ VLRWEPEQVT LLDLDAALVQ LFKTPDTDMP KRLSQALLAL NGNAFNDPRV KVIHDDAFNG VDKLIAAGDK YDAIIVDLPD PSHPDLNKLY SDYFYRKLKE LMSSDGALTV QSTSPYHAQK AFISVAKTLA LAGFDVKQYH HNVPSFGEWG WSIATLSGKD AQHRLGELTT LPIADDWLTL GLVKGAFEFP ANFYQDAASI KPNELGSLQL YHYHQQAWSE TQGLDLF
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