Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0827 |
Symbol | |
ID | 4256863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 939037 |
End bp | 939714 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638121438 |
Product | ribosomal large subunit pseudouridine synthase A |
Protein accession | YP_736883 |
Protein GI | 114046333 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000100067 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGATT TTATTTACCA ACCACCGACA ACTCCCTGGC TCGATGTGCT TTACCAAGAT AAAGACATTA TCGTGGTCAA CAAGCCTTCG GGATTATTGT CCGTGCCGGG TCGCGATCCC GCCCATTACG ACAGTGTGTA TGCCCGAGTA AAAGCCGAGC ATCCCCATTG CCAAATCGTC CATCGCCTCG ACATGGCGAC CTCAGGTGTT ATGGTGGTTG CGCTCATTCG TAGCGCCGAG CGCGAGCTAA AACGCCAATT TCACGATAGA GAAACCAGCA AAACCTATCT CGCTCGGGTG GCTGGTCATA TCAAAAACGA TACTGGCAGT GTGGATTACC CGCTAATCTG TGACTGGCCC AATCGCCCAA AACAGAAGGT TGACCACGAA ATTGGTAAAC CCTCATTAAC TCACTTCGAG GTGTTAAGCC GCGCCAAACG CTCGACTCTC GTTAAGCTAA AGCCGATTAC TGGACGCTCA CACCAACTCA GGGTGCATAT GATGGCACTT GGGCATCCTA TTCTCGGCGA CGGCTTTTAT GCCGATCCGC TGGCAAAATC CTTAGCACCG CGATTACTAC TCCACGCAGC AGAACTGACC ATAAAACACC CTTATACGGG TGAGAGCATG ACGTTCAGTG CCGATGCCCC CTTTTGTGAG CCAGAAGGTG AGCAATGA
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Protein sequence | MTDFIYQPPT TPWLDVLYQD KDIIVVNKPS GLLSVPGRDP AHYDSVYARV KAEHPHCQIV HRLDMATSGV MVVALIRSAE RELKRQFHDR ETSKTYLARV AGHIKNDTGS VDYPLICDWP NRPKQKVDHE IGKPSLTHFE VLSRAKRSTL VKLKPITGRS HQLRVHMMAL GHPILGDGFY ADPLAKSLAP RLLLHAAELT IKHPYTGESM TFSADAPFCE PEGEQ
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