Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0682 |
Symbol | |
ID | 4254993 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 801562 |
End bp | 802218 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638121295 |
Product | Sel1 domain-containing protein |
Protein accession | YP_736741 |
Protein GI | 114046191 |
COG category | [R] General function prediction only |
COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000509857 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000284829 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAAGTAT TCACCCTATT GTCATTGAGA GTCGTTATGC TACGTACTGC ATTAGTTGCG CTGCTGCCCT TAGTATCTTC AATGTGCTTT GCTGAAACAC AGGCGGTGGA TATTTATTCT CAAGATCAAT TGCTTGAAAT GATCCGCGGC GAGAAATATC TGGCAAGAGT GAAGCAAGAT GACTGTCAAT TAGTGCAAGA CATCGAAGCG CGCGCAGAAG TCTTAAAGCA GCCCCTGTAT CAGTTTTTGT GGGGGGAAAT GCTCAACCAT GGCACTTGCG TAAAAGCCAA TGCAGTCAAA GGCATGGGAT TATTGCAGGA GGCGGCCGAG CAGGGCAGTC CCGAGGCCAT GGTGAAACTT GCCGAATATT ATCAAAGTGG TAAGTTTGTA ATTCGTAATA AAGACCGTGC GGTCAATTAT TTATTACCAG CGGCGGCGAG CGGCAGTTTA GCCGCGCGGA TGATGTTGGT ACGTTTATAC GGTGAAGGTT ATGGTAGTCC AAGGGATTAC GAAATGGCCT ATAACTGGTT ATACAACAAT GTATTTACCG ATGAGGCAAC TAAGAAAAAA GCCTTGTCAT TACTGCAGGT GTTAGCCGCT AAAATGCCCG CCAGTGCAGT GGCGCGGGCC CAGCAAGAGC ACTTGCGAAC CCGTTGA
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Protein sequence | MQVFTLLSLR VVMLRTALVA LLPLVSSMCF AETQAVDIYS QDQLLEMIRG EKYLARVKQD DCQLVQDIEA RAEVLKQPLY QFLWGEMLNH GTCVKANAVK GMGLLQEAAE QGSPEAMVKL AEYYQSGKFV IRNKDRAVNY LLPAAASGSL AARMMLVRLY GEGYGSPRDY EMAYNWLYNN VFTDEATKKK ALSLLQVLAA KMPASAVARA QQEHLRTR
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