Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0675 |
Symbol | |
ID | 4254986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 794531 |
End bp | 795613 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638121288 |
Product | DegS serine peptidase |
Protein accession | YP_736734 |
Protein GI | 114046184 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00601071 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAATAA AAGAAACCCT GTTATATCTC GGTAAAGCCG TGCTCTTCGG CCTTATCATG GCGGCCATGT TTTTGTTAGT TACACACTAC TTCGACAATA AAAATCTCGG CAGCTCGTTA CTGCAAAACC GGGGTAATAA CACGGTCGAA CTCTCCTTTG CTAAGGCCGT ACGCCGCGCC GCCCCTGCCG TAGTCAATAT TTATAGCTTA AGTATCGATC AGAGCCGTCC GCTAAACTCT GGCTCCCTCC AAGGCCTAGG CTCTGGGGTG ATCATGAGTA AAGAAGGCTA TATTCTCACG AATTATCATG TGATTAAAAA AGCCGATGAA ATTGTGGTGG CACTCCAAGA TGGCCGCAAG TTCACCTCGG AAGTCGTAGG GTTTGATCCC GAAACCGATC TTTCTGTGCT TAAGATCGAA GGCGATAATC TTCCAACAGT GCCAGTCAAT CTCGACAGCC CACCACAGGT TGGGGATGTG GTATTAGCTA TTGGTAACCC TTATAACCTC GGCCAAACCA TTACTCAAGG CATTATCAGC GCCACGGGTC GTAACGGCTT AAGTTCTGGT TATTTAGACT TCTTACAGAC AGATGCCGCA ATTAACGCCG GTAACTCAGG CGGCGCCTTA ATCGACACTA ACGGTAGCCT GATTGGTATC AACACCGCCG CCTTCCAAGT GGGCGGCGAA GGTGGCGGCC ACGGGATTAA CTTTGCGATC CCGATTAAAC TGGCCCACAG CATCATGGGT AAACTGATTA AAAATGGTCG GGTGATCCGT GGTGCTCTAG GGATCTCTGG CGAACCGATT AACCCTGTTG TGGCGCAAAT CCTCAACCTA CCCGATTTAC GTGGGGTATT AGTCACAGGC GTCGATCCCA ATGGCCCTGC GGCGCGGGCA CAGCTACAAC CAAGGGATGT AATCATCAAA TACGATGGTG AAGATGTGCC AGGGGTCGAA ATGCTGATGG ATAGAATTGC TGAGACCACG CCCGGCAAGA AAATCATGAT GACGGTTATC CGCCAAGGCA AAGAGCAAGT ACTGCCGGTG ATTATCGATG AAAAGGTCGT CGTCGATAAT TAA
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Protein sequence | MTIKETLLYL GKAVLFGLIM AAMFLLVTHY FDNKNLGSSL LQNRGNNTVE LSFAKAVRRA APAVVNIYSL SIDQSRPLNS GSLQGLGSGV IMSKEGYILT NYHVIKKADE IVVALQDGRK FTSEVVGFDP ETDLSVLKIE GDNLPTVPVN LDSPPQVGDV VLAIGNPYNL GQTITQGIIS ATGRNGLSSG YLDFLQTDAA INAGNSGGAL IDTNGSLIGI NTAAFQVGGE GGGHGINFAI PIKLAHSIMG KLIKNGRVIR GALGISGEPI NPVVAQILNL PDLRGVLVTG VDPNGPAARA QLQPRDVIIK YDGEDVPGVE MLMDRIAETT PGKKIMMTVI RQGKEQVLPV IIDEKVVVDN
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