Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0512 |
Symbol | |
ID | 4258316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 587707 |
End bp | 588888 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638121126 |
Product | cystathionine gamma-synthase |
Protein accession | YP_736572 |
Protein GI | 114046022 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR02080] O-succinylhomoserine (thiol)-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.920975 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCAG GCAAATTAGT GACCGAACGT CAATTAGCCA CATTAGCAGT GCGTCAGGGT ATCGAAAGCG ATACTCAGTA TGGCGCGGTG GTGCCGCCAA TTTACCTGTC GACTAATTAC GCCTTCGATG GTCATAAAAA TCCTCGCGAA TTTGATTACA GCCGTTCCGG CAATCCTACC CGTAGCATCT TAGGTGACGC CTTAGCTAAG CTAGAAAAGG GCGCAACCGG TGTGGTGACT TGCACTGGCA TGGCAGCCAT TACTTTAGTG ACTACCTTGC TCGGCCCAGA TGATTTGCTG GTGGTGCCAC ACGATTGTTA CGGCGGTTCG TACCGTTTAT TCACTAACTT GGCTAAAAAG GGCCAATTTA AACTGCTGGT GGTCGATCAA ACCGACACTC AAGCTCTCGA GCAAGCCATC GCCCAGCAAC CTAAGATGGT GTGGATTGAA ACTCCATCAA ACCCTCTGCT GCGAGTCGTC GATATCGAAG CTATCGCGAA GGCGAGCCAC GCCGTGGGTG CTTTAGTGGT AGTGGACAAC ACTTTCCTCT CGCCAATTTT GCAGCAAGCG TTGTTACTCG GTGCCGATAT CGTTATCCAC TCCACCACTA AGTACATTAA TGGTCACAGC GATGTGGTGG GCGGCGCGGT GATCGCCAAA GATCCTCAAC TCGGTGAGAC CTTACATTGG TGGTCAAACA CCTTAGGTTT AACCGGTTCT GCCTTCGACA GTTATCAAAC CCTGCGGGGT CTGCGTACCT TGGCCGTGCG CATTCGCGAG CACCAGAGCA ATGCCCAGCG TATTGTGGAC GTGCTGACGA GCAGCCCAGT GGTGAGTAAA GTGTATTACC CAGGCCTTGC GGATCACCCC GGCCATGCCA TTGCCGCCAA GCAGCAAAAA GGCTTTGGCG CTATGCTGAG TTTTGAGCTT AAGGGCGGCG AGGCCGAAGT GGTTGCCTTT TTAGGTGCCT TAAGCTTATT CAGCGTGGCC GAGAGTTTAG GTGGCGTTGA GAGTCTCGTG GCCGTGCCTG CGACTATGAC CCACAGGGCG ATGGAGCCCC AAGCGCGTTA TGAAGCTGGC ATTAAAGACA CCCTATTACG TTTGTCGGTT GGTATTGAAG ATGCCGAAGA CTTAGTTGCA GATATTCAAG CAGGATTGGC CGCCGTTGCG GCTTGTCAGT AG
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Protein sequence | MTAGKLVTER QLATLAVRQG IESDTQYGAV VPPIYLSTNY AFDGHKNPRE FDYSRSGNPT RSILGDALAK LEKGATGVVT CTGMAAITLV TTLLGPDDLL VVPHDCYGGS YRLFTNLAKK GQFKLLVVDQ TDTQALEQAI AQQPKMVWIE TPSNPLLRVV DIEAIAKASH AVGALVVVDN TFLSPILQQA LLLGADIVIH STTKYINGHS DVVGGAVIAK DPQLGETLHW WSNTLGLTGS AFDSYQTLRG LRTLAVRIRE HQSNAQRIVD VLTSSPVVSK VYYPGLADHP GHAIAAKQQK GFGAMLSFEL KGGEAEVVAF LGALSLFSVA ESLGGVESLV AVPATMTHRA MEPQARYEAG IKDTLLRLSV GIEDAEDLVA DIQAGLAAVA ACQ
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