| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0384 |
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| Symbol | murD |
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| ID | 4258589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 427044 |
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| End bp | 428363 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638120989 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_736444 |
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| Protein GI | 114045894 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0329561 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAGTC AGTACTCACA CATAGTGTTA GGTTTGGGTG CCACCGGGCT CTCGGTAGTG
CGCTATTTGT GTGGAAAAGG GATCACACCC TTGGTGATGG ATAGCCGTCG CCAACCTCCA
GGTGCGGACA CCCTTGCCAG CGCATTCCCT GAGGTGCAGC TGATTGCGGG CGGATTCGAT
TGCCGTTACT TAGTGCAAGC AAAGCAAATC ATTATCAGCC CTGGCATTGC GATTGATACG
CCTGAGGTGC GCGCTGCACT GGATATGGGG ATTGAAGTCA TTGGCGATGT GGAGCTATTT
GCCCGTGAGA TTGCCGACCG TAAACCTTGT GTGCTTGGGA TTACTGGCTC AAACGGCAAG
TCGACCGTTA CCACCTTAGT GGGTGAAATG CTGCGTGAAG CAGGCATGGC GGTGGCAGTG
GGTGGCAATA TTGGCATTCC TGCGCTCGAT CTGCTGACGG AAAATGCCGA TATTTTTGTG
CTTGAGCTGT CGAGCTTCCA GCTCGAAACC ACCCACAGCT TAAACTGCGT GGCGTCGACC
TGCTTGAACG TGACCGAAGA TCATATGGAC AGATACAGCG ATATGGATGC CTATCGCAAG
GCCAAGCTGC GCCTGTACCA TCAAAGCCGC TCCATCATCT TTAACCGTGA TGATGCGCTG
ACTATCCCGA CAGAGCCGAT GAACCAAAAC AGCTTTGGTT TAGCGCCGCC AGAGGGCGAC
GAGTGGGGCA TTTGTGATAG CAAGATTTAC CACGGTCACA GTGAAATTAT GCCGATCACC
GAAGTATCGC TGATTGGTAG TCATAACCAT GCCAACTTAC TCGCTGCCAT GGCGCTGGTG
TATGCCGTGG GCGTAGATAA GCAAGTCATG GCTAAAGTGG CTCGTACCTT TACTGGCCTT
TCTCATCGCT GTGAAGTGGT TGGTGTAAAA GCGGGCGTGA CCTATGTGAA CGATTCGAAG
GCGACCAATG TTGGCGCCAC CGTCGCGGCG CTCGATGGGT TGAGCGATCA CTTAGGTGAC
ATTATTTTAA TTGCCGGTGG TGATGGTAAG GGCGCGGATT TCAGTCCGTT GGTCGAGCCG
TTAACGAAAG TGACACACCT CATCACCTTA GGTCGCGATG GCAATAAGGT AGCCGCATTG
AAGGAAGGGG CCATTAAGGT GGACTCTATG GCTGCAGCAG TGGCTAAGGC CGCCGAGTTA
GCCACCTCGG GCGATATCGT ACTCCTATCG CCAGCCTGTG CGAGCCTAGA TATGTACAGC
AACTTTATGG CTCGTGGGGA TGATTTTAGA AGCCAAGTGG AGCAACTCGA TGGCGAGTGA
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| Protein sequence | MQSQYSHIVL GLGATGLSVV RYLCGKGITP LVMDSRRQPP GADTLASAFP EVQLIAGGFD
CRYLVQAKQI IISPGIAIDT PEVRAALDMG IEVIGDVELF AREIADRKPC VLGITGSNGK
STVTTLVGEM LREAGMAVAV GGNIGIPALD LLTENADIFV LELSSFQLET THSLNCVAST
CLNVTEDHMD RYSDMDAYRK AKLRLYHQSR SIIFNRDDAL TIPTEPMNQN SFGLAPPEGD
EWGICDSKIY HGHSEIMPIT EVSLIGSHNH ANLLAAMALV YAVGVDKQVM AKVARTFTGL
SHRCEVVGVK AGVTYVNDSK ATNVGATVAA LDGLSDHLGD IILIAGGDGK GADFSPLVEP
LTKVTHLITL GRDGNKVAAL KEGAIKVDSM AAAVAKAAEL ATSGDIVLLS PACASLDMYS
NFMARGDDFR SQVEQLDGE
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