Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0315 |
Symbol | prpB |
ID | 4258312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 348515 |
End bp | 349393 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638120921 |
Product | 2-methylisocitrate lyase |
Protein accession | YP_736376 |
Protein GI | 114045826 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2513] PEP phosphonomutase and related enzymes |
TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAAA GCGCAGGATT ACGTTTTCGC CAAGCTCTTG CTAACTCAAA ACCGCTGCAA ATCGTCGGCA CCACTAATGC CTATTTCGCC CTGATGGCGG AGCAAACGGG TTTCCAAGCC CTGTATCTGT CGGGCGCGGG TGTAGCGAAC GCCTCCTACG GTTTACCGGA TTTAGGCATG ACCTCGATGA ATGACGTGCT GATCGATGCC GGTCGTATCA CTTCGGCAAC CCAACTGCCA CTGCTGGTCG ATATCGACAC AGGTTGGGGC GGCGCTTTCA ACATCGCCCG CACCATTAAA GAATTTGAAA AAGCAGGTGT TGCCGCCGTG CACATGGAAG ACCAGGTGTC GCAAAAGCGT TGTGGCCACA GACCCAACAA AGCGGTCGTC AGCACAGAGG AAATGGTTGA CCGTATCAAG GCCGCCGTCG ATGCCCGCAC CGATCCTAAC TTTGTGATCA TGGCGCGTAC CGATGCGGTT GCCGTAGAAG GTTTAGAAGC GGGTATCGAA CGTGCAAAAG CCTATATCGC CGCGGGTGCC GATATGATTT TCGCCGAAGC CTTAACTGAG CTCGACCAAT ACCGTCACTT CAAGGCGCAG GTTAACGCAC CAATTCTGGC GAACATGACC GAATTTGGCC AAACCCAATT GTTCAACAAA GAAGAACTCG CCGAAGCGGG CGCCGACATG GTGCTTTACC CACTCGGCAC TTTCCGCGCC GCTAACCAAG CCGCACTGAA AGTGATGCAA GCGCTGATGA ATGATGGTCA TCAACGCAAT GTCTTAGACA CTATGCAGAC CCGTGCGGAT CTGTATAAGT ACTTGGGCTA CCACGCCTTT GAAGACAAGT TAGATCAATT GTTTAGCCAA GATAAGTAA
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Protein sequence | MTQSAGLRFR QALANSKPLQ IVGTTNAYFA LMAEQTGFQA LYLSGAGVAN ASYGLPDLGM TSMNDVLIDA GRITSATQLP LLVDIDTGWG GAFNIARTIK EFEKAGVAAV HMEDQVSQKR CGHRPNKAVV STEEMVDRIK AAVDARTDPN FVIMARTDAV AVEGLEAGIE RAKAYIAAGA DMIFAEALTE LDQYRHFKAQ VNAPILANMT EFGQTQLFNK EELAEAGADM VLYPLGTFRA ANQAALKVMQ ALMNDGHQRN VLDTMQTRAD LYKYLGYHAF EDKLDQLFSQ DK
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