Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0228 |
Symbol | |
ID | 4255689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 243334 |
End bp | 244581 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638120832 |
Product | TPR repeat-containing protein |
Protein accession | YP_736290 |
Protein GI | 114045740 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.32958 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0059641 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGACAT TTTGGATTTT TATTGCGCTT GTTGTGTTGG TCAGCTTACT GCTGATCTGG ATCCCGCATT TCAGACAGCA AAAGTTGTTA CGCACTGAAG AAGCCGGCGT TCGCAAACAA ACTAACCTTG AGTTGTTCAA TGAACGTCTT GCCACGCTTG AGAAAGAGCT TAATGAAGAA CTACTCGACC AAGCAGAGTT TGATGCTCTA AAGAAAGAGT TAGAAATCAG CCTGCTCCAA GATATCAAAC AAGCGAGCGA TGATTCACTC GTCAATCAAA TCAAACCTAA GAGCATTCTG TGGCCATCAA TCATGTCAGT TTGCTTGATT GCGATCTCAG GTTACCTCTA TCAGCATTTA GGCGCTTTTG AGAATATTGG TAATACTCAA CCTGCTAACC CACATGCGGG TATGGACGCA GCGCAAATCA TGGCGCAACG CGTACAAATG ATGGAAGCCC AAGTACAAGC CGAGCCTGAA AACAGCCAAG CTTGGTTCAG CCTTGGACAT GCTTATATTT CGGCAAACCA ATTCGATAAA GCCGTTGCCG CGTTCGATAA AGTCATGGAT TTAGTCGGTA AGCATGCAGA GCTACTTGGC CCTAAAGCAA CTGCACTGTA CTACAAAAAC GGTCAGCAAA TGACACCGCA AATCCAAGCC TTAATTGATG AATCCTTAGC ATTAGATCCA CTGGATCCAT CGACATTACT GCTCGTGGGT ATGGATGCTT TCTTCACGGC TAACTATCAA AAGGCCATTG ATTCATGGCA AGCCATTCTA AGCAGCGACC GCACCGATGT TGACCGCGCC GCACTGATGA ATGCGATTGA AACAGCCAAC CTGCGTATGC AAGGCGAAAC TGCTGGCATG CCTAACGATG ACGTACACAA ACAGGCAAAA GTTGCGACGA AATCCGTAAG CATCGAAATT TCAATTTCGC CTGAGCTAGC AGCACAAGCA AGCCCAGAAG ACAGTATCTT TGTATTCGCC CGCGCAACTG AAGGCCCTAA AGTGCCATTA GCTGCGACTA AGGTCAGCGC AAAATCCTTA CCAATAACAG TCACCTTAGA TGACAGCACT GGCATGGGTG GCGACGTGAA ACTAAGCCAA ACTGCGAGCG TTGAAGTGAT CGCGGTGTTG TCTAAGCATG GCAATATCAA GCCTCAAGCG GGTGACATTC AAGGCAAGGT TAGCAAAGTG AATGTGGGTG AAACCGCAAA CTTAGTACTA GATACTCAAG TGCAATAA
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Protein sequence | MTTFWIFIAL VVLVSLLLIW IPHFRQQKLL RTEEAGVRKQ TNLELFNERL ATLEKELNEE LLDQAEFDAL KKELEISLLQ DIKQASDDSL VNQIKPKSIL WPSIMSVCLI AISGYLYQHL GAFENIGNTQ PANPHAGMDA AQIMAQRVQM MEAQVQAEPE NSQAWFSLGH AYISANQFDK AVAAFDKVMD LVGKHAELLG PKATALYYKN GQQMTPQIQA LIDESLALDP LDPSTLLLVG MDAFFTANYQ KAIDSWQAIL SSDRTDVDRA ALMNAIETAN LRMQGETAGM PNDDVHKQAK VATKSVSIEI SISPELAAQA SPEDSIFVFA RATEGPKVPL AATKVSAKSL PITVTLDDST GMGGDVKLSQ TASVEVIAVL SKHGNIKPQA GDIQGKVSKV NVGETANLVL DTQVQ
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