| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0194 |
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| Symbol | rplC |
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| ID | 4255322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 225381 |
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| End bp | 226019 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638120799 |
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| Product | 50S ribosomal protein L3 |
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| Protein accession | YP_736257 |
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| Protein GI | 114045707 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0087] Ribosomal protein L3 |
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| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000648086 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00032055 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGCTATCG GTCTTATTGG TCGTAAAGTT GGTATGACTC GCATCTTCAC TGAAGATGGT
GTTTCTATAC CTGTTACAGT AATTGAAGTT GCTGGCAACC GTGTTACTCA AGTGAAAACT
TTAGAAACTG ACGGCTACCG CGCACTTCAA GTTACTACTG GTACCAAAAA AGCCAATCGC
ATCACTAAAC CAGAAGCAGG TCACTTTGCC AAGAGCGGTG TTGAAGCCGG TCGTGGACTG
TGGGAATTGC GTCTGGCAGA CGGTGAAGGC GAAGGCATTG AAGTTGGTGC TGAGCTAAAC
GTAGGTATCT TCGCTGATGT AGCGAAAGTT GACGTTACTG GTCAATCTAA AGGTAAAGGC
TTCCAAGGCG GCGTTAAGCG TTGGAACTTC CGTACTCAAG ATATGACTCA CGGTAACTCT
TTGTCGCACC GTTCGAACGG TTCTATCGGT CAGAACCAAA CGCCTGGTCG CGTATTTAAA
GGCAAGAAAA TGTCAGGCCA CATGGGTGCC GAGCGTGTTA CTACTCAAAA TCTAGACGTT
GTACGTGTAG ATGTTGAACG TAACCTGCTA CTGGTTAAAG GTGCTGTTCC GGGCGCAACT
AACGGCGACC TGATCATCAA GCCTGCAGTT AAAGCTTAA
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| Protein sequence | MAIGLIGRKV GMTRIFTEDG VSIPVTVIEV AGNRVTQVKT LETDGYRALQ VTTGTKKANR
ITKPEAGHFA KSGVEAGRGL WELRLADGEG EGIEVGAELN VGIFADVAKV DVTGQSKGKG
FQGGVKRWNF RTQDMTHGNS LSHRSNGSIG QNQTPGRVFK GKKMSGHMGA ERVTTQNLDV
VRVDVERNLL LVKGAVPGAT NGDLIIKPAV KA
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