| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0187 |
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| Symbol | rpoB |
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| ID | 4257380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 211829 |
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| End bp | 215866 |
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| Gene Length | 4038 bp |
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| Protein Length | 1345 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638120792 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_736250 |
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| Protein GI | 114045700 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.248481 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0219546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCACAG
GTGTTGGATA TTCCTTACCT TTTGTCTATT CAGTTAGACT CTTTTAAGAA GTTCACCGAT
CAAGATCCTA CCGGTGAGCG CGGTCTAGAA GCCGCCTTCC GTAGCGTTTT TCCCATCAAG
AGCTTTTCTG GTAATTCAGA ACTGCAATAC GTCAGCTATA AGCTTGGCGA GCCTGTTTTT
GATGTGAAAG AGTGTCAGAT CCGTGGTGTT ACATATTCAG CGCCACTACG CGTTAAATTA
CGCATGGTGT TGTATGATCG TGAAGCAGCG GCCGGCACTG TAAAAGATAT TAAAGAACAA
GAAGTCTACA TGGGTGATAT CCCATTAATG ACTGACAACG GTACCTTTGT GATCAACGGT
ACTGAGCGTG TAATCGTATC TCAATTACAC CGCAGCCCAG GCGTGTTCTT TGATCATGAC
CGTGGTAAAA CCCACTCATC AGGTAAGGTG CTGTATAACG CACGTATCAT TCCTTACCGT
GGTTCATGGT TAGACTTTGA ATTCGACCCT AAAGATGCAC TGTTCGTACG TATTGACCGT
CGCCGTAAAT TACCTGCGAC CATCATTCTG CGCGCATTAG AGTATTCTAC TCAAGAGATC
CTCGATCTGT TCTTCGAACG CGTTGAGTTC AAGATCAAGA AAGATACTCT GGTTATGACC
TTAGTACCTG AGCGTCTGCG TGGCGAAACC GCCAGCTACG ACATCAAGGA TGCTGAAGGC
TCTGTATTGG TTGAAGCTGG CCGTCGTATC ACTGCACGCC ACATTCGCCA ATTAGAAAAA
ACCAATACCA CTGAACTCGA AGTGCCAGTT GAGTACATCG TGGGCAAATA TGCTGCCCAA
GATTACATCG ATCCGGACAC GGGTGAAGTC TTAGTTTCTG CTAACAGTGA AATCAGCTTA
GAAGACTTAG CGAAGTTATC ACTGGCAGGC ATCAAAGAGC TAAGCACGTT ATACATCAAC
GAGCTAGACC ACGGTGCTTA CATCTCTGAC ACTCTGCGTA TCGATCCAAC CACTAACCGC
TTAGAAGCGT TAGTTGAGAT CTACCGCATG ATGCGTCCTG GTGAGCCACC AACCAAAGAT
GCAGCAGAAG CGCTGTTCCA AAACTTATTC TTCAGCGAAG AACGTTATGA CCTGTCTAAA
GTAGGTCGTA TGAAGTTCAA CCGTCGTCTC AGCATTCCTG ATGACGAAGG TAGCGGCGTA
CTGTCTAAAG AAGACATCGT TGCAGTAATG AAGAACATCA TTCACATCCG TAACGGCTTC
GACGAAGTGG ACGATATCGA CCACTTAGGT AACCGTCGTA TTCGTTCTGT GGGTGAAATG
GCTGAAAACC AATTCCGTGT TGGTCTGGTC CGTGTTGAGC GCGCCGTGCG TGAACGTCTG
TCATTAGGCG ATCTGAACGA GCTGATGCCA CAAGACTTAA TCAACGCTAA GCCAATTTCT
GCTGCAGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCAC AATTCATGGA CCAAAACAAC
CCGCTGTCAG AAGTAACGCA TAAGCGTCGT ATTTCTGCTC TTGGCCCAGG TGGTTTGACC
CGTGAGCGTG CAGGCTTCGA AGTCCGCGAC GTACACCCAA CGCACTATGG TCGTTTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATCA ACTCATTAGC GAGCTTTGCC
CGTACTAACT CTTACGGCTT CTTAGAAACC CCATACCGCA AAGTGGTAGA CGGTGTGATC
ACTGACGATG TGGAATACTT GTCAGCGATT GAAGAAGGTC GTTATGTGAT TGCACAGGCG
AACATCGAAG TTGACTCACA AGGTCGCATG GTTGAAGAAC AGATCGCATG TCGTCACAAA
GGTGAATCTA CCTTTATGCG TGCGTCTGAC ATTCAATACA TGGACGTATC GCCACAACAG
ATCATCTCTG TTGCTGCGTC TCTGATCCCG TTCTTAGAAC ACGACGACGC GAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAAGCG GTACCAACAC TGAAATCAGA GAAGCCTCTG
GTCGGTACTG GTATTGAGCG CACGTTAGCT GTGGACTCAG GCGTAGTTGT TGCTGCCAAA
CGTGGCGGTG TGATCGATTA CGTTGATGCG AGCCGTATCG TAGTTAAAGT AAATGAAGAC
GAGCTGCGCC CAGGCGAAGC AGGTATCGAC ATTTACAACC TGACTAAGTA CACCCGTTCT
AACCAAAACA CTTGTATCAA CCAACGTCCA TGTTGTTCAG TTGGTGAGCC AGTGGTTCGT
GGTGACGTGT TAGCAGACGG TCCGTCTACT GACTTAGGTG ACTTAGCCCT TGGCCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGACTCGAT CTTAATTTCT
GAGCGTGTTG CACAGGAAGA CCGTTTCACC ACTATCCACA TTCAAGAGCT GTCTTGTATC
GCTCGTGATA CCAAGCTGGG TAGCGAAGAA ATCACTGCTG ACATTCCAAA CGTAGGTGAA
TCTGCTCTGT CGAAACTCGA CGAGTCAGGT ATCGTTTACA TCGGTGCAGA AGTGAAGGGT
GGTGACATTC TGGTAGGTAA AGTTACGCCA AAAGGCGAGA CGCAACTGAC TCCAGAAGAG
AAGTTACTAC GCGCTATCTT CGGTGAGAAA GCGTCTGATG TGAAAGACAG CTCACTGCGT
GTACCTAACT CTGTTAAAGG TACCATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT
GAGAAAGACA AACGTGCCAT TGAAATCGAA GAAATGCACA TTGCCCAAGC TCGTAAAGAC
TTAGGCGAAG AGTTCAAGAT CCTTGAAGAA GGCGTATTGA GCCGTGCGCG CAACTTATTA
TTAAGTGCCG GTTTCACTGA AGCACAAATC GCAGCATTGC CACGTAAAGA TGTATTGGTT
CAAGTTATTG ACGATGAAAC CAAACAAACT GAGCTTGAGC AATTAGCTGA ACAGCATGAA
GAGCTGAAAG CAGACTTCGA TAAGAAGTTT GAAATCAAAC GTCGCAAGAT CACCCAAGGT
GATGACTTGG CACCAGGCGT ACTGAAGATC GTTAAGGTTT ACTTAGCGGT TAAACGTACT
ATCCAACCAG GTGACAAGAT GGCGGGTCGT CACGGTAACA AGGGTGTTAT CTCTAAGATT
AACCCAATTG AAGACATGCC GTACGACGAG CAAGGCAACC CTGTGGACAT CGTATTGAAC
CCGCTAGGCG TTCCATCACG TATGAACATC GGTCAGGTTC TTGAAGTTCA CTTAGGTGCT
GCTGCTAAAG GTATTGGTAA CAAGATTGCT GCCATGCTGG AAGATCAGCG CGAGAAGGGA
CTTGCAGAAG TTCGTAGTTA CATCAAGCAA GTGTACGAAT TAGGTGACGA AGTGCAGCAG
CGCGTTGACA TCGATTCATT CACTGACGAT GAGTTACTGC GCTTAGCGAA CAACCTGAAA
GGCGGTATCC CAGTTGCTAC GCCAGCCTTC GACGGTGCTA AAGAGAAAGA GATCAAGCAG
ATGCTTGAGC TTGCAGGCTT GCCAACCTCT GGTCAGCTGA AATTATTTGA TGGTCGTACC
GGTAACGAAT TTGAGCGTCC AGTAACTGTA GGTTACATGT ACATGCTCAA ACTGAACCAC
TTAGTTGACG ATAAGATGCA CGCCCGTTCT ACCGGTTCGT ACAGCTTAGT GACTCAACAA
CCACTGGGCG GTAAAGCTCA GTTCGGTGGT CAGCGTTTCG GGGAGATGGA AGTGTGGGCA
CTAGAAGCAT ACGGTGCCGC TTATACGCTT CAAGAAATGC TCACCGTGAA ATCGGATGAC
GTTAACGGTC GTACTCAGAT GTATAAGAAC ATCGTCGACG GTAACCATCA GATGCAGCCT
GGCATGCCAG AGTCCTTCAA CGTATTACTG AAGGAGATCC GTTCACTCGG TATCAACATC
GAGTTGGATC AGGAATAA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA AGTVKDIKEQ
EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLPATIIL RALEYSTQEI LDLFFERVEF KIKKDTLVMT
LVPERLRGET ASYDIKDAEG SVLVEAGRRI TARHIRQLEK TNTTELEVPV EYIVGKYAAQ
DYIDPDTGEV LVSANSEISL EDLAKLSLAG IKELSTLYIN ELDHGAYISD TLRIDPTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIPDDEGSGV
LSKEDIVAVM KNIIHIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVVDGVI
TDDVEYLSAI EEGRYVIAQA NIEVDSQGRM VEEQIACRHK GESTFMRASD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLKSEKPL VGTGIERTLA VDSGVVVAAK
RGGVIDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGEPVVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAIEIE EMHIAQARKD
LGEEFKILEE GVLSRARNLL LSAGFTEAQI AALPRKDVLV QVIDDETKQT ELEQLAEQHE
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
NPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHLGA AAKGIGNKIA AMLEDQREKG
LAEVRSYIKQ VYELGDEVQQ RVDIDSFTDD ELLRLANNLK GGIPVATPAF DGAKEKEIKQ
MLELAGLPTS GQLKLFDGRT GNEFERPVTV GYMYMLKLNH LVDDKMHARS TGSYSLVTQQ
PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEMLTVKSDD VNGRTQMYKN IVDGNHQMQP
GMPESFNVLL KEIRSLGINI ELDQE
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